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通过CRISPR/Cas9D10A切口酶生成两种小鼠模型的数据。

Data on the generation of two mouse models by CRISPR / Cas9D10A nickase.

作者信息

Aísa-Marín Izarbe, López-Iniesta M José, Marfany Gemma

机构信息

Department of Genetics, Microbiology and Statistics, Universitat de Barcelona, Avda. Diagonal 643, Barcelona 08028, Spain.

CIBERER, ISCIII, Universitat de Barcelona, Barcelona, Spain.

出版信息

Data Brief. 2020 Oct 21;33:106447. doi: 10.1016/j.dib.2020.106447. eCollection 2020 Dec.

DOI:10.1016/j.dib.2020.106447
PMID:33163596
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7599427/
Abstract

encodes an orphan nuclear receptor that plays a dual function as both transcriptional activator and repressor in photoreceptors, being necessary for cone fate inhibition as well as rod differentiation and homeostasis. Mutations in this gene cause retinitis pigmentosa (RP), enhanced S cone syndrome (ESCS) and Goldmann-Favre syndrome (GFS). There is one reported isoform that contains all 8 exons and a second -previously unreported- shorter isoform, which only spans the first 7 exons and whose function is still unknown. In this data article, we designed and generated two new mouse models by targeting exon 8 of using the CRISPR/Cas9-D10A nickase in order to dissect the role of the two isoforms in function and elucidate the different disease mechanisms caused by mutations. This strategy generated several modified alleles that altered the coding sequence of the last exon thereby affecting functional domains of the transcription factor. Allele Δ27 is an in-frame deletion of 27 bp that ablates the dimerization domain, whereas allele ΔE8 (full deletion of exon 8), produces only the short isoform that lacks the dimerization and repressor domains. Morphological and functional alterations of both Δ27 and ΔE8 mutants are reported in the associated research article " functional domain ablation by CRISPR-Cas9D10A identifies a new isoform and generated Retinitis Pigmentosa and Enhanced S-cone Syndrome models" (Aísa-Marín et al., 2020).

摘要

编码一种孤儿核受体,该受体在光感受器中兼具转录激活因子和转录抑制因子的双重功能,对于视锥细胞命运抑制以及视杆细胞分化和稳态维持是必需的。该基因的突变会导致色素性视网膜炎(RP)、增强型S视锥综合征(ESCS)和戈德曼-法夫尔综合征(GFS)。据报道,有一种异构体包含所有8个外显子,还有第二种——此前未报道过的——较短的异构体,其仅跨越前7个外显子,其功能仍然未知。在这篇数据文章中,我们通过使用CRISPR/Cas9-D10A切口酶靶向[该基因]的第8外显子,设计并生成了两种新的小鼠模型,以剖析这两种异构体在[该基因]功能中的作用,并阐明由[该基因]突变引起的不同疾病机制。这种策略产生了几个修饰等位基因,这些等位基因改变了最后一个外显子的编码序列,从而影响转录因子的功能域。等位基因Δ27是一个27bp的框内缺失,它消除了二聚化结构域,而等位基因ΔE8(第8外显子完全缺失)仅产生缺乏二聚化和抑制结构域的短异构体。Δ27和ΔE8突变体的形态学和功能改变在相关研究文章《通过CRISPR-Cas9D10A进行功能域切除鉴定出一种新的异构体并生成色素性视网膜炎和增强型S视锥综合征模型》(艾萨-马林等人,2020年)中有报道。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a01d/7599427/6d670328d2f8/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a01d/7599427/44f3e2493a7d/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a01d/7599427/d50c2507af2e/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a01d/7599427/17741c7cc664/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a01d/7599427/0582d2655b9d/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a01d/7599427/6d670328d2f8/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a01d/7599427/44f3e2493a7d/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a01d/7599427/d50c2507af2e/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a01d/7599427/17741c7cc664/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a01d/7599427/0582d2655b9d/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a01d/7599427/6d670328d2f8/gr5.jpg

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本文引用的文献

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Neurobiol Dis. 2020 Dec;146:105122. doi: 10.1016/j.nbd.2020.105122. Epub 2020 Sep 30.
2
Paired D10A Cas9 nickases are sometimes more efficient than individual nucleases for gene disruption.成对的 D10A Cas9 切口酶有时比单个核酸酶更有效地用于基因破坏。
Nucleic Acids Res. 2018 Jul 6;46(12):e71. doi: 10.1093/nar/gky222.
3
CRISPR-Cas9(D10A) nickase-based genotypic and phenotypic screening to enhance genome editing.
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Sci Rep. 2016 Apr 15;6:24356. doi: 10.1038/srep24356.
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Genome-wide target specificities of CRISPR-Cas9 nucleases revealed by multiplex Digenome-seq.通过多重双基因组测序揭示的CRISPR-Cas9核酸酶的全基因组靶点特异性
Genome Res. 2016 Mar;26(3):406-15. doi: 10.1101/gr.199588.115. Epub 2016 Jan 19.
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Unbiased detection of off-target cleavage by CRISPR-Cas9 and TALENs using integrase-defective lentiviral vectors.利用整合酶缺陷型慢病毒载体无偏检测 CRISPR-Cas9 和 TALENs 的脱靶切割。
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