Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital, Boston, Massachusetts.
Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, Massachusetts.
Mol Cancer Res. 2021 Mar;19(3):475-484. doi: 10.1158/1541-7786.MCR-20-0548. Epub 2020 Nov 9.
Gleason score, a measure of prostate tumor differentiation, is the strongest predictor of lethal prostate cancer at the time of diagnosis. Metabolomic profiling of tumor and of patient serum could identify biomarkers of aggressive disease and lead to the development of a less-invasive assay to perform active surveillance monitoring. Metabolomic profiling of prostate tissue and serum samples was performed. Metabolite levels and metabolite sets were compared across Gleason scores. Machine learning algorithms were trained and tuned to predict transformation or differentiation status from metabolite data. A total of 135 metabolites were significantly different ( < 0.05) in tumor versus normal tissue, and pathway analysis identified one sugar metabolism pathway ( = 0.03). Machine learning identified profiles that predicted tumor versus normal tissue (AUC of 0.82 ± 0.08). In tumor tissue, 25 metabolites were associated with Gleason score (unadjusted < 0.05), 4 increased in high grade while the remainder were enriched in low grade. While pyroglutamine and 1,5-anhydroglucitol were correlated (0.73 and 0.72, respectively) between tissue and serum from the same patient, no metabolites were consistently associated with Gleason score in serum. Previously reported as well as novel metabolites with differing abundance were identified across tumor tissue. However, a "metabolite signature" for Gleason score was not obtained. This may be due to study design and analytic challenges that future studies should consider. IMPLICATIONS: Metabolic profiling can distinguish benign and neoplastic tissues. A novel unsupervised machine learning method can be utilized to achieve this distinction.
格里森评分是衡量前列腺肿瘤分化程度的指标,是诊断时致命性前列腺癌的最强预测因子。肿瘤和患者血清的代谢组学分析可以鉴定出侵袭性疾病的生物标志物,并开发出一种侵入性较小的检测方法来进行主动监测。对前列腺组织和血清样本进行了代谢组学分析。比较了各格里森评分的代谢物水平和代谢物集。训练和调整机器学习算法以从代谢物数据预测转化或分化状态。肿瘤与正常组织相比,有 135 种代谢物差异有统计学意义( < 0.05),途径分析确定了一个糖代谢途径( = 0.03)。机器学习确定了可预测肿瘤与正常组织的特征(AUC 为 0.82 ± 0.08)。在肿瘤组织中,有 25 种代谢物与格里森评分相关(未校正 < 0.05),其中 4 种在高级别中增加,其余在低级别中富集。虽然焦谷氨酸和 1,5-脱水葡萄糖醇在同一患者的组织和血清之间存在相关性(分别为 0.73 和 0.72),但没有代谢物在血清中与格里森评分一致相关。在肿瘤组织中,鉴定到了以前报道过的以及丰度不同的新型代谢物。然而,并没有获得格里森评分的“代谢物特征”。这可能是由于研究设计和分析挑战,未来的研究应该考虑这些问题。意义:代谢组学可以区分良性和肿瘤组织。可以利用一种新的无监督机器学习方法来实现这一区分。