Hunan Research Center of Engineering Technology for Utilization of Environmental and Resources Plant, Central South University of Forestry and Technology, Changsha 410004 Hunan, PR China.
College of Forestry, Northwest A &F University, Yangling, 712100 Shaanxi, PR China.
Int J Syst Evol Microbiol. 2020 Dec;70(12):6458-6467. doi: 10.1099/ijsem.0.004556.
Two novel actinobacteria, designated strains GY16 and T44, were isolated from the leaves and rhizosphere soil of , respectively. A polyphasic approach was used for determining their taxonomic position. Results of 16S rRNA gene sequence analysis indicated that strain GY16 exhibited highest similarities to subsp. CGMCC 4.1593 (98.82 %), KCTC 19241 (98.76 %), NRRL B-16523 (98.69 %), KACC 20186 (98.69 %) and NBRC 13407 (98.69 %), and strain T44 showed 99.2, 99.1, 99.1 and <98.7 % sequence similarities to CGMCC 4.1452, subsp. DSM 40028, DSM 40539 and other species, respectively. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain GY16 formed an independent subclade, which indicated that strain GY16 should belong to a potential novel species; and strain T44 was closely related to CGMCC 4.1452, subsp. DSM 40028, DSM 40539 and DSM 40224. However, the multilocus sequence analysis evolutionary distance, average nucleotide identity and DNA-DNA hybridization values between closely related relatives were far from the species-level thresholds. In addition, phenotypic and chemotaxonomic characteristics further confirmed that strains GY16 and T44 belonged to two distinct species. Based on these results, it is concluded that the isolated strains represent novel species within the genus , for which the names sp. nov. (type strain GY16=CICC 24807=KCTC 49326) and sp. nov. (type strain T44=CICC 24819=JCM 33918) are proposed.
两株新的放线菌,分别命名为菌株 GY16 和 T44,分别从 和 的叶片和根际土壤中分离得到。采用多相鉴定方法确定其分类地位。16S rRNA 基因序列分析结果表明,菌株 GY16 与 subsp. CGMCC 4.1593(98.82%)、KCTC 19241(98.76%)、NRRL B-16523(98.69%)、KACC 20186(98.69%)和 NBRC 13407(98.69%)的相似度最高,菌株 T44 与 CGMCC 4.1452、 subsp. DSM 40028、DSM 40539 和其他 种的相似度分别为 99.2%、99.1%、99.1%和 <98.7%。基于 16S rRNA 基因序列的系统发育分析表明,菌株 GY16 形成一个独立的亚分支,表明菌株 GY16 应属于一个潜在的新种;而菌株 T44 与 CGMCC 4.1452、 subsp. DSM 40028、DSM 40539 和 DSM 40224 关系密切。然而,密切相关的亲缘关系的多位点序列分析进化距离、平均核苷酸同一性和 DNA-DNA 杂交值远低于种水平的阈值。此外,表型和化学分类特征进一步证实,菌株 GY16 和 T44 属于两个不同的种。基于这些结果,可以得出结论,所分离的菌株代表 属内的新种,分别命名为 sp. nov.(菌株 GY16=CICC 24807=KCTC 49326)和 sp. nov.(菌株 T44=CICC 24819=JCM 33918)。