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巴西卡亚比印第安人种植的花生品种,落花生(豆目,豆科):起源、多样性与进化

Brazilian Kayabi Indian accessions of peanut, Arachis hypogaea (Fabales, Fabaceae): origin, diversity and evolution.

作者信息

Nascimento Eliza Fabricio de Melo Bellard do, Leal-Bertioli Soraya Cristina de Macedo, Bertioli David John, Chavarro Carolina, Freitas Fábio Oliveira, Moretzsohn Márcio de Carvalho, Guimarães Patricia Messenberg, Valls José Francisco Montenegro, Araujo Ana Claudia Guerra de

机构信息

Universidade de Brasília, Instituto de Ciências Biológicas, Campus Darcy Ribeiro, Brasília, DF, Brazil.

Embrapa Recursos Genéticos e Biotecnologia, Brasília, DF, Brazil.

出版信息

Genet Mol Biol. 2020 Nov 6;43(4):e20190418. doi: 10.1590/1678-4685-GMB-2019-0418. eCollection 2020.

DOI:10.1590/1678-4685-GMB-2019-0418
PMID:33174976
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7644258/
Abstract

Peanut is a crop of the Kayabi tribe, inhabiting the Xingu Indigenous Park, Brazil. Morphological analysis of Xingu accessions showed variation exceeding that described for cultivated peanuts. This raised questions as to the origin of the Xingu accessions: are they derived from different species, or is their diversity a result of different evolutionary and selection processes? To answer these questions, cytogenetic and genotyping analyses were conducted. The karyotypes of Xingu accessions analyzed are very similar to each other, to an A. hypogaea subsp. fastigiata accession and to the wild allotetraploid A. monticola. The accessions share the number and general morphology of the chromosomes; DAPI+ bands; 5S and 45S rDNA loci distribution and a high genomic affinity with A. duranensis and A. ipaënsis genomic probes. However, the number of CMA3+ bands differs from those determined for A. hypogaea and A. monticola, which are also different from each other. SNP genotyping grouped all Arachis allotetraploids into four taxonomic groups: Xingu accessions were closer to A. monticola and A. hypogaea subsp. hypogaea. Our data suggests that the morphological diversity within these accessions is not associated with a different origin and can be attributed to morphological plasticity and different selection by the Indian tribes.

摘要

花生是居住在巴西欣古印第安人保护区的卡亚比部落的一种作物。对欣古地区的花生品种进行形态学分析发现,其变异程度超过了已报道的栽培花生。这就引发了关于欣古地区花生品种起源的问题:它们是源自不同物种,还是其多样性是不同进化和选择过程的结果?为了回答这些问题,我们进行了细胞遗传学和基因分型分析。所分析的欣古地区花生品种的核型彼此非常相似,与普通型花生品种以及野生异源四倍体蒙蒂科拉花生相似。这些品种在染色体数量和总体形态、DAPI+带、5S和45S rDNA位点分布以及与杜兰花生和伊帕内玛花生基因组探针的高基因组亲和力方面具有共性。然而,CMA3+带的数量与普通花生和蒙蒂科拉花生不同,普通花生和蒙蒂科拉花生之间也存在差异。单核苷酸多态性基因分型将所有花生属异源四倍体分为四个分类组:欣古地区的花生品种与蒙蒂科拉花生和普通花生亚种更为接近。我们的数据表明,这些花生品种的形态多样性并非源于不同的起源,而是可归因于形态可塑性以及印第安部落的不同选择。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f392/7644258/8607daa349ce/1415-4757-GMB-43-4-e20190418-gf07.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f392/7644258/191207bddc69/1415-4757-GMB-43-4-e20190418-gf01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f392/7644258/76870c2ddb9a/1415-4757-GMB-43-4-e20190418-gf02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f392/7644258/1693bb3378e6/1415-4757-GMB-43-4-e20190418-gf03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f392/7644258/2cfd85f2127a/1415-4757-GMB-43-4-e20190418-gf04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f392/7644258/3a79b6a1ebe9/1415-4757-GMB-43-4-e20190418-gf05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f392/7644258/27b2afbb7102/1415-4757-GMB-43-4-e20190418-gf06.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f392/7644258/8607daa349ce/1415-4757-GMB-43-4-e20190418-gf07.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f392/7644258/191207bddc69/1415-4757-GMB-43-4-e20190418-gf01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f392/7644258/76870c2ddb9a/1415-4757-GMB-43-4-e20190418-gf02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f392/7644258/1693bb3378e6/1415-4757-GMB-43-4-e20190418-gf03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f392/7644258/2cfd85f2127a/1415-4757-GMB-43-4-e20190418-gf04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f392/7644258/3a79b6a1ebe9/1415-4757-GMB-43-4-e20190418-gf05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f392/7644258/27b2afbb7102/1415-4757-GMB-43-4-e20190418-gf06.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f392/7644258/8607daa349ce/1415-4757-GMB-43-4-e20190418-gf07.jpg

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本文引用的文献

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Nat Genet. 2019 May;51(5):877-884. doi: 10.1038/s41588-019-0405-z. Epub 2019 May 1.
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Machine Learning as an Effective Method for Identifying True Single Nucleotide Polymorphisms in Polyploid Plants.机器学习作为一种有效方法,用于鉴定多倍体植物中的真正单核苷酸多态性。
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The genome structure of (Linnaeus, 1753) and an induced allotetraploid revealed by molecular cytogenetics.
(林奈,1753年)的基因组结构以及通过分子细胞遗传学揭示的诱导异源四倍体。
Comp Cytogenet. 2018 Mar 14;12(1):111-140. doi: 10.3897/CompCytogen.v12i1.20334. eCollection 2018.
4
The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut.栽培花生的二倍体祖先——刺山柑和安第斯花生的基因组序列。
Nat Genet. 2016 Apr;48(4):438-46. doi: 10.1038/ng.3517. Epub 2016 Feb 22.
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RFLP variability in peanut (Arachis hypogaea L.) cultivars and wild species.花生(Arachis hypogaea L.)品种和野生种的 RFLP 多态性。
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Characterization of Brazilian accessions of wild Arachis species of section Arachis (Fabaceae) using heterochromatin detection and fluorescence in situ hybridization (FISH).利用异染色质检测和荧光原位杂交(FISH)对巴西野生花生属 Arachis 组(豆科)植物种的系谱进行鉴定。
Genet Mol Biol. 2013 Sep;36(3):364-70. doi: 10.1590/S1415-47572013000300011. Epub 2013 Aug 30.
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