• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

撰写科学软件论文的 10 个简单规则

Ten simple rules for writing a paper about scientific software.

机构信息

Institute for Biomedical Informatics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.

Department of Epidemiology, Biostatistics, and Informatics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.

出版信息

PLoS Comput Biol. 2020 Nov 12;16(11):e1008390. doi: 10.1371/journal.pcbi.1008390. eCollection 2020 Nov.

DOI:10.1371/journal.pcbi.1008390
PMID:33180774
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7660560/
Abstract

Papers describing software are an important part of computational fields of scientific research. These "software papers" are unique in a number of ways, and they require special consideration to improve their impact on the scientific community and their efficacy at conveying important information. Here, we discuss 10 specific rules for writing software papers, covering some of the different scenarios and publication types that might be encountered, and important questions from which all computational researchers would benefit by asking along the way.

摘要

描述软件的论文是科学研究计算领域的重要组成部分。这些“软件论文”在许多方面都是独特的,需要特别考虑,以提高它们对科学界的影响,并有效地传达重要信息。在这里,我们讨论了编写软件论文的 10 条具体规则,涵盖了可能遇到的一些不同场景和出版类型,以及所有计算研究人员都可以从中受益的重要问题。

相似文献

1
Ten simple rules for writing a paper about scientific software.撰写科学软件论文的 10 个简单规则
PLoS Comput Biol. 2020 Nov 12;16(11):e1008390. doi: 10.1371/journal.pcbi.1008390. eCollection 2020 Nov.
2
Rules to be adopted for publishing a scientific paper.发表科学论文应采用的规则。
Ann Ital Chir. 2016;87:1-3.
3
Students' satisfaction and perceived impact on knowledge, attitudes and skills after a 2-day course in scientific writing: a prospective longitudinal study in Spain.在参加为期两天的科学写作课程后,学生的满意度以及对知识、态度和技能的感知影响:西班牙的一项前瞻性纵向研究。
BMJ Open. 2018 Jan 27;8(1):e018657. doi: 10.1136/bmjopen-2017-018657.
4
Ten Simple Rules for writing algorithmic bioinformatics conference papers.撰写算法生物信息学会议论文的 10 个简单规则
PLoS Comput Biol. 2020 Apr 2;16(4):e1007742. doi: 10.1371/journal.pcbi.1007742. eCollection 2020 Apr.
5
Writing for publication: Argument and evidence.撰写论文以供发表:论点与证据。
Women Birth. 2024 May;37(3):101595. doi: 10.1016/j.wombi.2024.101595. Epub 2024 Mar 19.
6
How to get your paper accepted for publication.如何让你的论文被接受发表。
Paediatr Respir Rev. 2012 Jun;13(2):130-2. doi: 10.1016/j.prrv.2011.02.004. Epub 2011 Mar 10.
7
Writing a strong scientific paper in medicine and the biomedical sciences: a checklist and recommendations for early career researchers.撰写医学和生物医学科学领域的高质量科研论文:给早期职业研究人员的清单及建议
Biol Futur. 2021 Dec;72(4):395-407. doi: 10.1007/s42977-021-00095-z. Epub 2021 Jul 28.
8
How to write and publish scientific papers: scribing information for pharmacists.如何撰写和发表科学论文:为药剂师记录信息。
Am J Hosp Pharm. 1992 Oct;49(10):2477-84.
9
Ten simple rules for creating a scientific web application.创建科学网络应用程序的十则简单规则。
PLoS Comput Biol. 2021 Dec 9;17(12):e1009574. doi: 10.1371/journal.pcbi.1009574. eCollection 2021 Dec.
10
Writing biomedical manuscripts part I: fundamentals and general rules.撰写生物医学稿件 第一部分:基础与一般规则
West Afr J Med. 2011 May-Jun;30(3):151-7.

引用本文的文献

1
Guidance for sharing computational models of neural stimulation: from project planning to publication.神经刺激计算模型共享指南:从项目规划到发表
J Neural Eng. 2025 Mar 13;22(2). doi: 10.1088/1741-2552/adb997.
2
MEPFeatX-automated feature extraction of motor-evoked potentials in transcranial magnetic stimulation.MEPFeatX-经颅磁刺激中运动诱发电位的自动特征提取
Front Neurosci. 2025 Jan 14;18:1415257. doi: 10.3389/fnins.2024.1415257. eCollection 2024.
3
A how-to guide for code sharing in biology.生物学代码共享指南
PLoS Biol. 2024 Sep 10;22(9):e3002815. doi: 10.1371/journal.pbio.3002815. eCollection 2024 Sep.
4
Ten simple rules to make computable knowledge shareable and reusable.使可计算知识具有可分享性和可重用性的 10 条简单规则。
PLoS Comput Biol. 2024 Jun 20;20(6):e1012179. doi: 10.1371/journal.pcbi.1012179. eCollection 2024 Jun.
5
Evaluating LC-HRMS metabolomics data processing software using FAIR principles for research software.使用研究软件的FAIR原则评估液相色谱-高分辨质谱代谢组学数据处理软件。
Metabolomics. 2023 Feb 6;19(2):11. doi: 10.1007/s11306-023-01974-3.

本文引用的文献

1
Recommendations to enhance rigor and reproducibility in biomedical research.推荐增强生物医学研究的严谨性和可重复性的建议。
Gigascience. 2020 Jun 1;9(6). doi: 10.1093/gigascience/giaa056.
2
Ten simple rules for getting started on Twitter as a scientist.科学家在推特上起步的十条简单规则。
PLoS Comput Biol. 2020 Feb 10;16(2):e1007513. doi: 10.1371/journal.pcbi.1007513. eCollection 2020 Feb.
3
Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks.在Jupyter Notebook中撰写和分享计算分析的十条简单规则。
PLoS Comput Biol. 2019 Jul 25;15(7):e1007007. doi: 10.1371/journal.pcbi.1007007. eCollection 2019 Jul.
4
Scaling tree-based automated machine learning to biomedical big data with a feature set selector.使用特征集选择器将基于树的自动化机器学习扩展到生物医学大数据。
Bioinformatics. 2020 Jan 1;36(1):250-256. doi: 10.1093/bioinformatics/btz470.
5
Ten simple rules for documenting scientific software.记录科学软件的十条简单规则。
PLoS Comput Biol. 2018 Dec 20;14(12):e1006561. doi: 10.1371/journal.pcbi.1006561. eCollection 2018 Dec.
6
Ten simple rules for making research software more robust.使研究软件更稳健的十条简单规则。
PLoS Comput Biol. 2017 Apr 13;13(4):e1005412. doi: 10.1371/journal.pcbi.1005412. eCollection 2017 Apr.
7
Ten Simple Rules for Developing Usable Software in Computational Biology.计算生物学中开发可用软件的十条简单规则。
PLoS Comput Biol. 2017 Jan 5;13(1):e1005265. doi: 10.1371/journal.pcbi.1005265. eCollection 2017 Jan.
8
Ten Simple Rules for Developing Public Biological Databases.开发公共生物数据库的十条简单规则。
PLoS Comput Biol. 2016 Nov 10;12(11):e1005128. doi: 10.1371/journal.pcbi.1005128. eCollection 2016 Nov.
9
Ten Simple Rules for Taking Advantage of Git and GitHub.利用Git和GitHub的十条简单规则。
PLoS Comput Biol. 2016 Jul 14;12(7):e1004947. doi: 10.1371/journal.pcbi.1004947. eCollection 2016 Jul.
10
Functional characterization of somatic mutations in cancer using network-based inference of protein activity.利用基于网络的蛋白质活性推断对癌症中的体细胞突变进行功能表征。
Nat Genet. 2016 Aug;48(8):838-47. doi: 10.1038/ng.3593. Epub 2016 Jun 20.