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定量乙酰组分析揭示了葡糖基转移酶乙酰化在变形链球菌生物膜形成中的作用。

Quantitative acetylome analysis reveals involvement of glucosyltransferase acetylation in Streptococcus mutans biofilm formation.

机构信息

State Key Laboratory of Oral Diseases, West China Hospital of Stomatology, Sichuan University, Chengdu, China.

West China School of Public Health and West China Fourth Hospital, Sichuan University, Chengdu, China.

出版信息

Environ Microbiol Rep. 2021 Apr;13(2):86-97. doi: 10.1111/1758-2229.12907. Epub 2020 Nov 24.

DOI:10.1111/1758-2229.12907
PMID:33185947
Abstract

Streptococcus mutans (S. mutans) effectively utilizes dietary sucrose for the exopolysaccharide productions, which are mostly synthesized by the effects of glucosyltransferases (Gtfs). In the present study, the acetylome of S. mutans was identified and quantitative acetylome analysis of the bacterial biofilm growth (SMB) was compared with that of planktonic growth (SMP). The dynamic changes of protein acetylation were quantified using the integrated approach involving TMT labeling and Kac affinity enrichment followed by high-resolution mass spectrometry-based quantitative proteomics. In total, 973 acetylation sites in 445 proteins were identified, among which 617 acetylation sites in 302 proteins were quantitated. The overall analysis indicated that 22.7% of proteins were acetylated. Among the quantified proteins in SMB, the acetylation degree of lysine in 56 sites increased, while that of lysine decreased in 52 sites. In the acetylome of S. mutans, six significantly enriched motifs were identified and obtained including KacK, KacF, KacR, KacY, KacH, F*Kac. In addition, KEGG pathway-based enrichment analysis indicated significant enrichments in glycolysis/gluconeogenesis, and RNA degradation. Particularly, most downregulated acetylated lysine proteins were glucosyltransferase-SI, glucosyltransferase-I, and glucosyltransferase-S in S. mutans biofilm, which probably reveals a switch-off mechanism for the regulation of glucosyltransferases function during the biofilm development.

摘要

变形链球菌(S. mutans)有效地利用饮食中的蔗糖来合成胞外多糖,这些多糖主要是由葡糖基转移酶(Gtfs)的作用合成的。在本研究中,鉴定了变形链球菌的乙酰组,并比较了细菌生物膜生长(SMB)和浮游生长(SMP)的定量乙酰组分析。通过 TMT 标记和 Kac 亲和富集与基于高分辨率质谱的定量蛋白质组学相结合的综合方法,对蛋白质乙酰化的动态变化进行了定量。总共鉴定了 445 个蛋白质中的 973 个乙酰化位点,其中 302 个蛋白质中的 617 个乙酰化位点被定量。总体分析表明,22.7%的蛋白质被乙酰化。在 SMB 中的定量蛋白质中,56 个赖氨酸位点的赖氨酸乙酰化程度增加,而 52 个赖氨酸位点的赖氨酸乙酰化程度降低。在变形链球菌的乙酰组中,鉴定并获得了六个明显富集的基序,包括 KacK、KacF、KacR、KacY、KacH、F*Kac。此外,KEGG 途径富集分析表明,糖酵解/糖异生和 RNA 降解途径显著富集。特别是,在变形链球菌生物膜中,大多数下调的乙酰化赖氨酸蛋白是葡糖基转移酶-SI、葡糖基转移酶-I 和葡糖基转移酶-S,这可能揭示了在生物膜发育过程中调节葡糖基转移酶功能的关闭机制。

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