Department of Molecular Biophysics, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Berlin, Germany.
Institute of Biological Information Processing (IBI-7: Structural Biochemistry), Forschungszentrum Jülich, Jülich, Germany.
Nat Commun. 2020 Nov 13;11(1):5759. doi: 10.1038/s41467-020-19611-1.
Bacteriophage SPP1 is a double-stranded DNA virus of the Siphoviridae family that infects the bacterium Bacillus subtilis. This family of phages features a long, flexible, non-contractile tail that has been difficult to characterize structurally. Here, we present the atomic structure of the tail tube of phage SPP1. Our hybrid structure is based on the integration of structural restraints from solid-state nuclear magnetic resonance (NMR) and a density map from cryo-EM. We show that the tail tube protein gp17.1 organizes into hexameric rings that are stacked by flexible linker domains and, thus, form a hollow flexible tube with a negatively charged lumen suitable for the transport of DNA. Additionally, we assess the dynamics of the system by combining relaxation measurements with variances in density maps.
噬菌体现 SPP1 是一种感染枯草芽孢杆菌的双链 DNA 病毒,属于长尾噬菌体科。该噬菌体家族的特征是具有一条长而灵活、不可收缩的长尾,其结构一直难以确定。在这里,我们呈现了噬菌体 SPP1 的尾管原子结构。我们的混合结构基于固态核磁共振 (NMR) 的结构约束和低温电子显微镜 (cryo-EM) 密度图的整合。我们表明,尾管蛋白 gp17.1 组织成六聚体环,这些环由灵活的连接域堆叠,从而形成一个带有带负电荷腔的中空柔性管,适合 DNA 的运输。此外,我们通过将弛豫测量与密度图的方差相结合来评估系统的动力学。