Mao Ying, Zhang Nan, Nie Yimeng, Zhang Xue, Li Xuejuan, Huang Yuan
College of Life Sciences, Shaanxi Normal University, Xi'an, China.
Front Physiol. 2020 Oct 22;11:567125. doi: 10.3389/fphys.2020.567125. eCollection 2020.
Comparative studies of insect genome size show that Orthoptera is a unique group of Insecta with a significantly enlarged genome. To determine a suitable internal standard for a large genome and to compare the effects of different internal standards on estimates of genome size, we used four internal standards to estimate nuclear DNA content in nine insect species with large genomes. The results showed that the combination of two internal standards, (♂1C = 6.20 pg, ♀1C = 6.60 pg) and ♂ (1C = 3.41 pg), was suitable for estimating large genome of Caelifera by flow cytometry. Using these two internal standards, we estimated the genome sizes of 17 species of Caelifera (12 genera in Acrididae, 2 genera in Pamphagidae, 1 genus in Pyrgomorphidae) using flow cytometry. Genomes ranged from 6.57 pg () to 18.64 pg (), the largest described in insects to date. These species showed significant genomic dimorphism based on sex: females had a 0.56 pg larger genome than males on average, which might be due to the sex chromosome determinism mechanism of X0(♂)/XX(♀). To test the results obtained by flow cytometry, we used k-mers of Illumina sequencing data to gauge the C-value of and . The results of the two methods are slightly different. Genomes were estimated to be about 0.28 and 0.26 pg smaller, respectively, than the flow cytometry values. Furthermore, we also reconstructed the evolutionary relationships of these taxa and discuss the genome size evolution in a phylogenetic framework.
昆虫基因组大小的比较研究表明,直翅目是昆虫纲中一个独特的类群,其基因组显著增大。为了确定适用于大基因组的内标,并比较不同内标对基因组大小估计的影响,我们使用了四种内标来估计9种大基因组昆虫的核DNA含量。结果表明,两种内标的组合,即(♂1C = 6.20 pg,♀1C = 6.60 pg)和♂(1C = 3.41 pg),适用于通过流式细胞术估计蝗亚目的大基因组。使用这两种内标,我们通过流式细胞术估计了17种蝗亚目昆虫(蝗科12属、癞蝗科2属、锥头蝗科1属)的基因组大小。基因组大小范围从6.57 pg()到18.64 pg(),是迄今为止昆虫中描述的最大基因组。这些物种基于性别表现出显著的基因组二态性:雌性基因组平均比雄性大0.56 pg,这可能是由于X0(♂)/XX(♀)的性染色体决定机制。为了检验流式细胞术获得的结果,我们使用Illumina测序数据的k-mer来测量和的C值。两种方法的结果略有不同。通过Illumina测序数据估计的基因组分别比流式细胞术的值小约0.28和0.26 pg。此外,我们还重建了这些分类单元的进化关系,并在系统发育框架内讨论了基因组大小的进化。