Suppr超能文献

通过流式细胞术和k-mer分析确定的九种昆虫的基因组大小

Genome Sizes of Nine Insect Species Determined by Flow Cytometry and -mer Analysis.

作者信息

He Kang, Lin Kejian, Wang Guirong, Li Fei

机构信息

Department of Entomology, College of Plant Protection, Nanjing Agricultural University Nanjing, China.

State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences Beijing, China.

出版信息

Front Physiol. 2016 Nov 24;7:569. doi: 10.3389/fphys.2016.00569. eCollection 2016.

Abstract

The flow cytometry method was used to estimate the genome sizes of nine agriculturally important insects, including two coleopterans, five Hemipterans, and two hymenopterans. Among which, the coleopteran (Kuschel) had the largest genome of 981 Mb. The average genome size was 504 Mb, suggesting that insects have a moderate-size genome. Compared with the insects in other orders, hymenopterans had small genomes, which were averagely about ~200 Mb. We found that the genome sizes of four insect species were different between male and female, showing the organismal complexity of insects. The largest difference occurred in the coconut leaf beetle (Gestro). The male coconut leaf beetle had a 111 Mb larger genome than females, which might be due to the chromosome number difference between the sexes. The results indicated that insect invasiveness was not related to genome size. We also determined the genome sizes of the small brown planthopper (Fallén) and the parasitic wasp (Brischke) using -mer analysis with Illunima Solexa sequencing data. There were slight differences in the results from the two methods. -mer analysis indicated that the genome size of was 500-700 Mb and that of . was ~150 Mb. In all, the genome sizes information presented here should be helpful for designing the genome sequencing strategy when necessary.

摘要

采用流式细胞术方法估算了9种农业重要昆虫的基因组大小,其中包括2种鞘翅目昆虫、5种半翅目昆虫和2种膜翅目昆虫。其中,鞘翅目昆虫(库舍尔)的基因组最大,为981 Mb。平均基因组大小为504 Mb,表明昆虫具有中等大小的基因组。与其他目的昆虫相比,膜翅目昆虫的基因组较小,平均约为200 Mb。我们发现4种昆虫的基因组大小在雌雄之间存在差异,这显示了昆虫的生物体复杂性。最大的差异出现在椰心叶甲(格斯托)中。雄性椰心叶甲的基因组比雌性大111 Mb,这可能是由于两性之间的染色体数目差异所致。结果表明昆虫的入侵性与基因组大小无关。我们还利用Illunima Solexa测序数据通过k-mer分析确定了灰飞虱(法伦)和寄生蜂(布里施克)的基因组大小。两种方法的结果存在细微差异。k-mer分析表明,灰飞虱的基因组大小为500 - 700 Mb,寄生蜂的基因组大小约为150 Mb。总之,这里给出的基因组大小信息在必要时应有助于设计基因组测序策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5b4d/5121235/74a450bd683f/fphys-07-00569-g0001.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验