Leibniz Institute for the Analysis of Biodiversity Change (LIB), Museum of Nature, Hamburg, Germany.
Institute of Medical Biochemistry and Laboratory Diagnostics, Centre of Oncocytogenomics, General University Hospital in Prague, Prague, Czech Republic.
PLoS One. 2023 Mar 15;18(3):e0275551. doi: 10.1371/journal.pone.0275551. eCollection 2023.
Animal genomes vary widely in size, and much of their architecture and content remains poorly understood. Even among related groups, such as orders of insects, genomes may vary in size by orders of magnitude-for reasons unknown. The largest known insect genomes were repeatedly found in Orthoptera, e.g., Podisma pedestris (1C = 16.93 pg), Stethophyma grossum (1C = 18.48 pg) and Bryodemella holdereri (1C = 18.64 pg). While all these species belong to the suborder of Caelifera, the ensiferan Deracantha onos (1C = 19.60 pg) was recently found to have the largest genome. Here, we present new genome size estimates of 50 further species of Ensifera (superfamilies Gryllidea, Tettigoniidea) and Caelifera (Acrididae, Tetrigidae) based on flow cytometric measurements. We found that Bryodemella tuberculata (Caelifera: Acrididae) has the so far largest measured genome of all insects with 1C = 21.96 pg (21.48 gBp). Species of Orthoptera with 2n = 16 and 2n = 22 chromosomes have significantly larger genomes than species with other chromosome counts. Gryllidea genomes vary between 1C = 0.95 and 2.88 pg, and Tetrigidae between 1C = 2.18 and 2.41, while the genomes of all other studied Orthoptera range in size from 1C = 1.37 to 21.96 pg. Reconstructing ancestral genome sizes based on a phylogenetic tree of mitochondrial genomic data, we found genome size values of >15.84 pg only for the nodes of Bryodemella holdereri / B. tuberculata and Chrysochraon dispar / Euthystira brachyptera. The predicted values of ancestral genome sizes are 6.19 pg for Orthoptera, 5.37 pg for Ensifera, and 7.28 pg for Caelifera. The reasons for the large genomes in Orthoptera remain largely unknown, but a duplication or polyploidization seems unlikely as chromosome numbers do not differ much. Sequence-based genomic studies may shed light on the underlying evolutionary mechanisms.
动物基因组的大小差异很大,其结构和内容的很大一部分仍然知之甚少。即使在亲缘关系密切的群体中,例如昆虫目,基因组的大小也可能相差几个数量级——原因尚不清楚。已知最大的昆虫基因组一再出现在直翅目昆虫中,例如 Podisma pedestris(1C = 16.93 pg)、Stethophyma grossum(1C = 18.48 pg)和 Bryodemella holdereri(1C = 18.64 pg)。虽然所有这些物种都属于蜚蠊亚目,但最近发现 ensiferan Deracantha onos(1C = 19.60 pg)拥有最大的基因组。在这里,我们根据流式细胞术测量结果,提供了 50 种直翅目(超科 Gryllidea、Tettigoniidea)和半翅目(蝗科、螽斯科) ensifera 物种的新基因组大小估计值。我们发现,Bryodemella tuberculata(半翅目:蝗科)具有迄今为止所有昆虫中最大的测量基因组,1C = 21.96 pg(21.48 gBp)。具有 2n = 16 和 2n = 22 条染色体的直翅目物种的基因组明显大于具有其他染色体数的物种。Gryllidea 基因组的大小在 1C = 0.95 到 2.88 pg 之间,而 Tetrigidae 的大小在 1C = 2.18 到 2.41 pg 之间,而所有其他研究的直翅目物种的基因组大小在 1C = 1.37 到 21.96 pg 之间。根据线粒体基因组数据的系统发育树重建祖先基因组大小,我们发现只有在 Bryodemella holdereri / B. tuberculata 和 Chrysochraon dispar / Euthystira brachyptera 的节点上才存在>15.84 pg 的基因组大小值。直翅目、螽斯和半翅目的祖先基因组大小预测值分别为 6.19 pg、5.37 pg 和 7.28 pg。直翅目动物基因组较大的原因在很大程度上仍然未知,但由于染色体数量差异不大,因此似乎不太可能发生重复或多倍化。基于序列的基因组研究可能会揭示潜在的进化机制。