Rudolf Virchow Center for Integrative and Translational Bioimaging, Institute for Structural Biology, University of Würzburg, 97080 Würzburg, Germany.
Nucleic Acids Res. 2020 Dec 2;48(21):12282-12296. doi: 10.1093/nar/gkaa911.
The superfamily 2 helicase XPB is an integral part of the general transcription factor TFIIH and assumes essential catalytic functions in transcription initiation and nucleotide excision repair. The ATPase activity of XPB is required in both processes. We investigated the interaction network that regulates XPB via the p52 and p8 subunits with functional mutagenesis based on our crystal structure of the p52/p8 complex and current cryo-EM structures. Importantly, we show that XPB's ATPase can be activated either by DNA or by the interaction with the p52/p8 proteins. Intriguingly, we observe that the ATPase activation by p52/p8 is significantly weaker than the activation by DNA and when both p52/p8 and DNA are present, p52/p8 dominates the maximum activation. We therefore define p52/p8 as the master regulator of XPB acting as an activator and speed limiter at the same time. A correlative analysis of the ATPase and translocase activities of XPB shows that XPB only acts as a translocase within the context of complete core TFIIH and that XPA increases the processivity of the translocase complex without altering XPB's ATPase activity. Our data define an intricate network that tightly controls the activity of XPB during transcription and nucleotide excision repair.
超家族 2 解旋酶 XPB 是一般转录因子 TFIIH 的一个组成部分,在转录起始和核苷酸切除修复中发挥重要的催化作用。XPB 的 ATP 酶活性在这两个过程中都是必需的。我们基于我们的 p52/p8 复合物晶体结构和当前的 cryo-EM 结构,利用功能诱变研究了调节 XPB 的 p52 和 p8 亚基的相互作用网络。重要的是,我们表明 XPB 的 ATP 酶可以通过 DNA 或与 p52/p8 蛋白的相互作用而被激活。有趣的是,我们观察到 p52/p8 对 ATP 酶的激活作用明显弱于 DNA 的激活作用,并且当 p52/p8 和 DNA 都存在时,p52/p8 占主导地位。因此,我们将 p52/p8 定义为 XPB 的主要调节剂,同时充当激活剂和限速器。对 XPB 的 ATP 酶和转位酶活性的相关分析表明,XPB 仅在完整核心 TFIIH 的背景下才充当转位酶,并且 XPA 增加了转位酶复合物的连续性,而不改变 XPB 的 ATP 酶活性。我们的数据定义了一个复杂的网络,该网络在转录和核苷酸切除修复过程中紧密控制 XPB 的活性。