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基于 55.1kb 长的 19 基因数据集的系统基因组分析结果显示,该数据集包含一个单系的 ,其中包括 物种复合体。

Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic that Includes the Species Complex.

机构信息

Department of Plant Pathology and Environmental Microbiology, Pennsylvania State University, University Park, PA 16802, U.S.A.

Directorate General of Health Services, Ministry of Health, Ibri, Oman.

出版信息

Phytopathology. 2021 Jul;111(7):1064-1079. doi: 10.1094/PHYTO-08-20-0330-LE. Epub 2021 Sep 9.

Abstract

Scientific communication is facilitated by a data-driven, scientifically sound taxonomy that considers the end-user's needs and established successful practice. In 2013, the community voiced near unanimous support for a concept of that represented a clade comprising all agriculturally and clinically important species, including the species complex (FSSC). Subsequently, this concept was challenged in 2015 by one research group who proposed dividing the genus into seven genera, including the FSSC described as members of the genus , with subsequent justification in 2018 based on claims that the 2013 concept of is polyphyletic. Here, we test this claim and provide a phylogeny based on exonic nucleotide sequences of 19 orthologous protein-coding genes that strongly support the monophyly of including the FSSC. We reassert the practical and scientific argument in support of a genus that includes the FSSC and several other basal lineages, consistent with the longstanding use of this name among plant pathologists, medical mycologists, quarantine officials, regulatory agencies, students, and researchers with a stake in its taxonomy. In recognition of this monophyly, 40 species described as genus were recombined in genus , and nine others were renamed Here the global community voices strong support for the inclusion of the FSSC in , as it remains the best scientific, nomenclatural, and practical taxonomic option available.

摘要

科学交流得益于数据驱动、科学合理的分类法,该分类法考虑了最终用户的需求和既定的成功实践。2013 年,该领域几乎一致支持一个概念,即代表一个进化枝,包含所有农业和临床重要的物种,包括 FSSC。随后,在 2015 年,一个研究小组对这一概念提出了挑战,他们提议将属分为七个属,包括 FSSC 被描述为属的成员,随后在 2018 年基于声称 2013 年的概念是多系的这一说法提出了后续的理由。在这里,我们检验了这一说法,并提供了基于 19 个直系同源蛋白编码基因外显子核苷酸序列的系统发育,该系统发育强烈支持包括 FSSC 在内的属的单系性。我们重申了支持包括 FSSC 在内的属的实用和科学论据,以及其他几个基础谱系,这与植物病理学家、医学真菌学家、检疫官员、监管机构、对其分类学有利益关系的学生和研究人员长期以来使用这个名称是一致的。为了承认这种单系性,40 个被描述为属的物种被重新组合到属中,另外 9 个物种被重新命名为属。在这里,全球科学界强烈支持将 FSSC 纳入属,因为它仍然是最科学、命名法和实用的分类选择。

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