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来自的单硫醇和二硫醇谷氧还蛋白-1:通过核磁共振、X射线晶体学和氢氘交换质谱法鉴定结构域交换结构

Monothiol and dithiol glutaredoxin-1 from : identification of domain-swapped structures by NMR, X-ray crystallography and HDX mass spectrometry.

作者信息

Lee Kitaik, Yeo Kwon Joo, Choi Sae Hae, Lee Eun Hye, Kim Bo Keun, Kim Sulhee, Cheong Hae-Kap, Lee Won-Kyu, Kim Hwa-Young, Hwang Eunha, Woo Ju Rang, Lee Sung-Joon, Hwang Kwang Yeon

机构信息

Department of Biotechnology, School of Life Sciences and Biotechnology for BK21 PLUS, Institute of Life Science and Natural Resources, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 02841, Republic of Korea.

Structural Plant Biology Laboratory, Department of Botany and Plant Biology, University of Geneva, 1211 Geneva, Switzerland.

出版信息

IUCrJ. 2020 Sep 19;7(Pt 6):1019-1027. doi: 10.1107/S2052252520011598. eCollection 2020 Nov 1.

DOI:10.1107/S2052252520011598
PMID:33209316
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7642778/
Abstract

Protein dimerization or oligomerization resulting from swapping part of the protein between neighboring polypeptide chains is known to play a key role in the regulation of protein function and in the formation of protein aggregates. Glutaredoxin-1 from (cGrx1) was used as a model to explore the formation of multiple domain-swapped conformations, which were made possible by modulating several hinge-loop residues that can form a pivot for domain swapping. Specifically, two alternative domain-swapped structures were generated and analyzed using nuclear magnetic resonance (NMR), X-ray crystallography, circular-dichroism spectroscopy and hydrogen/deuterium-exchange (HDX) mass spectrometry. The first domain-swapped structure (β3-swap) was formed by the hexameric cGrx1-cMsrA complex. The second domain-swapped structure (β1-swap) was formed by monothiol cGrx1 (C16S) alone. In summary, the first domain-swapped structure of an oxidoreductase in a hetero-oligomeric complex is presented. In particular, a single point mutation of a key cysteine residue to serine led to the formation of an intramolecular disulfide bond, as opposed to an intermolecular disulfide bond, and resulted in modulation of the underlying free-energy landscape of protein oligomerization.

摘要

已知相邻多肽链之间的蛋白质部分交换导致的蛋白质二聚化或寡聚化在蛋白质功能调节和蛋白质聚集体形成中起关键作用。来自的谷氧还蛋白-1(cGrx1)被用作模型来探索多结构域交换构象的形成,通过调节几个可形成结构域交换枢轴的铰链环残基使这种构象成为可能。具体而言,使用核磁共振(NMR)、X射线晶体学、圆二色光谱和氢/氘交换(HDX)质谱法生成并分析了两种替代的结构域交换结构。第一种结构域交换结构(β3-交换)由六聚体cGrx1-cMsrA复合物形成。第二种结构域交换结构(β1-交换)由单硫醇cGrx1(C16S)单独形成。总之,展示了异源寡聚复合物中氧化还原酶的首个结构域交换结构。特别是,关键半胱氨酸残基突变为丝氨酸导致形成分子内二硫键,而非分子间二硫键,并导致蛋白质寡聚化潜在自由能景观的调节。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76a8/7642778/601e41ec64a8/m-07-01019-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76a8/7642778/577430aac5de/m-07-01019-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76a8/7642778/3c76270257fa/m-07-01019-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76a8/7642778/c497573760dc/m-07-01019-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76a8/7642778/9063514a90c4/m-07-01019-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76a8/7642778/601e41ec64a8/m-07-01019-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76a8/7642778/577430aac5de/m-07-01019-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76a8/7642778/3c76270257fa/m-07-01019-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76a8/7642778/c497573760dc/m-07-01019-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76a8/7642778/9063514a90c4/m-07-01019-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76a8/7642778/601e41ec64a8/m-07-01019-fig5.jpg

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本文引用的文献

1
Understanding protein domain-swapping using structure-based models of protein folding.利用基于结构的蛋白质折叠模型理解蛋白质结构域交换。
Prog Biophys Mol Biol. 2017 Sep;128:113-120. doi: 10.1016/j.pbiomolbio.2016.09.013. Epub 2016 Nov 17.
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Evidence for the dimerization-mediated catalysis of methionine sulfoxide reductase A from Clostridium oremlandii.来自奥氏梭菌的甲硫氨酸亚砜还原酶A二聚化介导催化作用的证据。
PLoS One. 2015 Jun 24;10(6):e0131523. doi: 10.1371/journal.pone.0131523. eCollection 2015.
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Mechanism of 1-Cys type methionine sulfoxide reductase A regeneration by glutaredoxin.谷氧还蛋白对1-半胱氨酸型甲硫氨酸亚砜还原酶A的再生机制。
Biochem Biophys Res Commun. 2015 Feb 20;457(4):567-71. doi: 10.1016/j.bbrc.2015.01.025. Epub 2015 Jan 16.
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The GSH- and GSSG-bound structures of glutaredoxin from Clostridium oremlandii.来自奥氏梭菌的谷氧还蛋白与谷胱甘肽(GSH)和氧化型谷胱甘肽(GSSG)结合的结构
Arch Biochem Biophys. 2014 Dec 15;564:20-5. doi: 10.1016/j.abb.2014.09.001. Epub 2014 Sep 10.
8
Optical control of protein-protein interactions via blue light-induced domain swapping.通过蓝光诱导的结构域交换实现蛋白质-蛋白质相互作用的光控。
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Three-dimensional domain swapping and supramolecular protein assembly: insights from the X-ray structure of a dimeric swapped variant of human pancreatic RNase.三维结构域交换与超分子蛋白质组装:来自人胰腺核糖核酸酶二聚体交换变体X射线结构的见解
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