Department of Veterinary & Biomedical Sciences, South Dakota State University, Brookings, SD, 57007, USA.
South Dakota Center for Biologics Research and Commercialization, Brookings, SD, USA.
F1000Res. 2020 Sep 16;9:1142. doi: 10.12688/f1000research.25540.1. eCollection 2020.
: serotype Mbandaka ( ser. Mbandaka) is a multi-host adapted Non-typhoidal (NTS) that can cause foodborne illnesses in human. Outbreaks of ser. Mbandaka contributed to the economic stress caused by NTS due to hospitalizations. Whole genome sequencing (WGS)-based phylogenomic analysis facilitates better understanding of the genomic features that may expedite the foodborne spread of ser. Mbandaka. : In the present study, we define the population structure, antimicrobial resistance (AMR), and virulence profile of ser. Mbandaka using WGS data of more than 400 isolates collected from different parts of the world. We validated the genotypic prediction of AMR and virulence phenotypically using an available set of representative isolates. : Phylogenetic analysis of ser. Mbandaka using Bayesian approaches revealed clustering of the population into two major groups; however, clustering of these groups and their subgroups showed no pattern based on the host or geographical origin. Instead, we found a uniform virulence gene repertoire in all isolates. Phenotypic analysis on a representative set of isolates showed a similar trend in cell invasion behavior and adaptation to a low pH environment. Both genotypic and phenotypic analysis revealed the carriage of multidrug resistance (MDR) genes in ser. Mbandaka. : Overall, our results show that the presence of multidrug resistance along with adaptation to broad range of hosts and uniformity in the virulence potential, isolates of ser. Mbandaka from any source could have the potential to cause foodborne outbreaks as well as AMR dissemination.
血清型 Mbandaka(血清 Mbandaka)是一种多宿主适应的非伤寒型(NTS),可导致人类食源性疾病。血清 Mbandaka 引起的爆发导致 NTS 导致的经济压力,因为需要住院治疗。全基因组测序(WGS)为基础的系统发生基因组分析有助于更好地了解可能加速血清 Mbandaka 食源性传播的基因组特征。在本研究中,我们使用来自世界各地的 400 多个分离株的 WGS 数据定义了血清 Mbandaka 的种群结构、抗生素耐药性(AMR)和毒力特征。我们使用一组可用的代表性分离株对 AMR 和毒力表型的基因型预测进行了验证。使用贝叶斯方法对血清 Mbandaka 进行系统发育分析显示,该种群分为两个主要群体;然而,这些群体及其亚群的聚类没有根据宿主或地理起源显示出模式。相反,我们在所有分离株中发现了一个统一的毒力基因库。对一组代表性分离株的表型分析显示,细胞入侵行为和适应低 pH 环境的能力相似。基因型和表型分析均显示血清 Mbandaka 携带多药耐药(MDR)基因。总体而言,我们的结果表明,多药耐药的存在以及对广泛宿主的适应和毒力潜力的一致性,来自任何来源的血清 Mbandaka 分离株都有可能引起食源性爆发以及 AMR 的传播。