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从日本冲绳珊瑚中发现的一种细菌的高质量基因组草图序列

High-Quality Draft Genome Sequence of a Bacterium Found in Coral from Okinawa, Japan.

作者信息

Ide Keigo, Nishikawa Yohei, Kogawa Masato, Iwamoto Eisuke, Samuel Ashok Zachariah, Nakano Yoshikatsu, Takeyama Haruko

机构信息

Department of Life Science and Medical Bioscience, Waseda University, Tokyo, Japan.

Computational Bio Big-Data Open Innovation Laboratory, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan.

出版信息

Microbiol Resour Announc. 2020 Nov 25;9(48):e00848-20. doi: 10.1128/MRA.00848-20.

DOI:10.1128/MRA.00848-20
PMID:33239461
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7686419/
Abstract

-like organisms are important for the survival and functioning of corals, prompting an investigation of their complete genomes. Earlier reports of the genomes of these organisms remain incomplete. Here, we report a novel draft genome of bacterial strain SESOKO1, found in coral, using single-cell genome technology.

摘要

类似生物对于珊瑚的生存和功能至关重要，这促使人们对它们的完整基因组展开研究。此前关于这些生物基因组的报告仍不完整。在此，我们利用单细胞基因组技术报告了在珊瑚中发现的细菌菌株SESOKO1的一个新的基因组草图。

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Microbiome. 2020 Jan 23;8(1):5. doi: 10.1186/s40168-019-0779-2.
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GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.GTDB-Tk：一个使用基因组分类数据库对基因组进行分类的工具包。
Bioinformatics. 2019 Nov 15;36(6):1925-7. doi: 10.1093/bioinformatics/btz848.
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Phylogenetic, genomic, and biogeographic characterization of a novel and ubiquitous marine invertebrate-associated Rickettsiales parasite, Candidatus Aquarickettsia rohweri, gen. nov., sp. nov.新型普遍存在的海洋无脊椎动物相关立克次体寄生虫——罗尔氏游动微菌的系统发育、基因组和生物地理特征，候选新属新种。
ISME J. 2019 Dec;13(12):2938-2953. doi: 10.1038/s41396-019-0482-0. Epub 2019 Aug 5.
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Massively parallel whole genome amplification for single-cell sequencing using droplet microfluidics.利用液滴微流控技术进行单细胞测序的大规模并行全基因组扩增。
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