Tini Giulia, Varma Vijayalakshmi, Lombardo Rosario, Nolen Greg T, Lefebvre Gregory, Descombes Patrick, Métairon Sylviane, Priami Corrado, Kaput Jim, Scott-Boyer Marie-Pier
The Microsoft Research - University of Trento Centre for Computational and Systems Biology, Piazza Manifattura 1, 38068, Rovereto, Italy.
Department of Mathematics, University of Trento, Via Sommarive 14, 38050, Povo, Italy.
Genes Nutr. 2020 Nov 26;15(1):21. doi: 10.1186/s12263-020-00680-2.
Increased adipogenesis and altered adipocyte function contribute to the development of obesity and associated comorbidities. Fructose modified adipocyte metabolism compared to glucose, but the regulatory mechanisms and consequences for obesity are unknown. Genome-wide methylation and global transcriptomics in SGBS pre-adipocytes exposed to 0, 2.5, 5, and 10 mM fructose, added to a 5-mM glucose-containing medium, were analyzed at 0, 24, 48, 96, 192, and 384 h following the induction of adipogenesis.
Time-dependent changes in DNA methylation compared to baseline (0 h) occurred during the final maturation of adipocytes, between 192 and 384 h. Larger percentages (0.1% at 192 h, 3.2% at 384 h) of differentially methylated regions (DMRs) were found in adipocytes differentiated in the glucose-containing control media compared to adipocytes differentiated in fructose-supplemented media (0.0006% for 10 mM, 0.001% for 5 mM, and 0.005% for 2.5 mM at 384 h). A total of 1437 DMRs were identified in 5237 differentially expressed genes at 384 h post-induction in glucose-containing (5 mM) control media. The majority of them inversely correlated with the gene expression, but 666 regions were positively correlated to the gene expression.
Our studies demonstrate that DNA methylation regulates or marks the transformation of morphologically differentiating adipocytes (seen at 192 h), to the more mature and metabolically robust adipocytes (as seen at 384 h) in a genome-wide manner. Lower (2.5 mM) concentrations of fructose have the most robust effects on methylation compared to higher concentrations (5 and 10 mM), suggesting that fructose may be playing a signaling/regulatory role at lower concentrations of fructose and as a substrate at higher concentrations.
脂肪生成增加和脂肪细胞功能改变有助于肥胖及其相关合并症的发展。与葡萄糖相比,果糖会改变脂肪细胞代谢,但肥胖的调节机制和后果尚不清楚。在脂肪生成诱导后的0、24、48、96、192和384小时,分析了添加到含5 mM葡萄糖培养基中的0、2.5、5和10 mM果糖处理的SGBS前脂肪细胞中的全基因组甲基化和整体转录组学。
与基线(0小时)相比,DNA甲基化的时间依赖性变化发生在脂肪细胞最终成熟期间,即192至384小时之间。与在补充果糖的培养基中分化的脂肪细胞相比(384小时时,10 mM为0.0006%,5 mM为0.001%,2.5 mM为0.005%),在含葡萄糖的对照培养基中分化的脂肪细胞中发现了更大比例(192小时时为0.1%,384小时时为3.2%)的差异甲基化区域(DMR)。在含葡萄糖(5 mM)对照培养基中诱导后384小时的5237个差异表达基因中,共鉴定出1437个DMR。其中大多数与基因表达呈负相关,但666个区域与基因表达呈正相关。
我们的研究表明,DNA甲基化在全基因组范围内调节或标记形态学上分化的脂肪细胞(在192小时时可见)向更成熟和代谢更活跃的脂肪细胞(在384小时时可见)的转变。与较高浓度(5和10 mM)相比,较低浓度(2.5 mM)的果糖对甲基化的影响最为显著,这表明果糖在较低浓度下可能发挥信号/调节作用,而在较高浓度下作为底物。