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14003 辣椒疫霉全基因组序列资源,辣椒疫病的致病菌。

Whole Genome Sequence Resource for f. sp. 14003, the Causative Agent of Pepper Wilt.

机构信息

Innovative Institute for Plant Health, Zhongkai University of Agriculture and Engineering, Guangzhou 510225, China.

出版信息

Plant Dis. 2021 Apr;105(4):1183-1186. doi: 10.1094/PDIS-10-20-2294-A. Epub 2021 Mar 9.

Abstract

Pepper wilt, caused by the fungal pathogen f. sp. , is one of the main diseases on pepper. In this study, we obtained the whole genome sequence of the highly virulent f. sp. strain 14003 sequenced using the Illumina HiSeq 2000 platform. In total, 3.87 million paired-end reads were obtained and assembled into 796 scaffolds with a genome-wide length of 47.6 Mb. In addition, we filtered genes that may be related to specific virulence factors and performed a comparative analysis between the genome of strain 14003 and the sequenced genomes of 36 isolates. The genome-sequencing results for strain 14003 will enhance the theoretical basis for pepper wilt prevention and control.

摘要

辣椒疫病由真菌病原菌辣椒疫霉引起,是辣椒的主要病害之一。本研究利用 Illumina HiSeq 2000 平台对高毒力的辣椒疫霉 14003 菌株进行全基因组测序,共获得 387 万对末端测序reads,组装成 796 个基因组支架,全长 47.6Mb。此外,我们筛选了可能与特定毒力因子相关的基因,并对 14003 菌株的基因组与已测序的 36 个分离株的基因组进行了比较分析。14003 菌株的基因组测序结果将为辣椒疫病的防治提供理论基础。

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