Collection de l'Institut Pasteur (CIP), Département de Microbiologie, Institut Pasteur, 28 rue du docteur Roux, 75015 Paris, France.
Hub de Bioinformatique et Biostatistique, Département de Biologie Computationnelle, Institut Pasteur, USR 3756 CNRS, 28 rue du docteur Roux, 75015 Paris, France.
Int J Syst Evol Microbiol. 2021 Jan;71(1). doi: 10.1099/ijsem.0.004576. Epub 2020 Nov 30.
Genome sequence analysis of two strains collected in Canada at the end of the 1970s and deposited in 1998 at the Collection de l'Institut Pasteur has led to the taxonomic description of a novel fish-associated species in the genus . Both strains, CIP 105534 and CIP 105535, were yellow-pigmented, Gram-stain-negative, non-spore-forming rod-shaped bacteria that exhibited gliding motility. They grew aerobically in a temperature range from 5 to 30 °C with optimal growth at 25 °C on trypticase soy or Reasoner's 2A agar but they did not grow on marine agar. Their major fatty acid profiles were similar, consisting of iso-C, C ω7 and/or iso-C 2-OH (shown as summed feature 3), C 3-OH, iso-C 3-OH and C. The major polyamine was -homospermidine. Phosphatidylethanolamine and, most notably, ornithine-containing lipid OL2 and unidentified aminophospholipid APL1 were major polar lipids. A yellow pigment spot was visible after chromatographic analysis. The predominant respiratory quinone was MK-6. The G+C content of the two genomes was 34 mol% and their size was around 5.8 Mb. Comparison of the 16S rRNA gene sequences with those of the closely related type strains showed high levels of relatedness with and . All average nucleotide identity (ANI) and digital DNA-DNA hybridization values estimated against publicly available genome assemblies were lower than 90 and 30 %, respectively. Phylogenetic, phenotypic and chemotaxonomic data indicated that the two strains represent a novel species of the genus , for which the name sp. nov. is proposed. The type strain is CIP 105534 (=LMG 1342). The unique ability of to use melibiose as a sole source of carbon could provide a simple phenotypic test to discriminate from its closest relatives.
对 20 世纪 70 年代末在加拿大收集并于 1998 年保藏于巴斯德研究所收藏馆的两株菌进行基因组序列分析,导致了该属中一种新型鱼类相关物种的分类描述。两株菌,CIP 105534 和 CIP 105535,为黄色、革兰氏阴性、非孢子形成的杆状细菌,具有滑行运动能力。它们在 5 到 30°C 的温度范围内有氧生长,在 25°C 时在胰蛋白酶大豆或雷纳 2A 琼脂上最佳生长,但在海洋琼脂上不生长。它们的主要脂肪酸谱相似,由 iso-C、Cω7 和/或 iso-C2-OH(表示为总和特征 3)、C3-OH、iso-C3-OH 和 C 组成。主要聚胺是 -高丝氨酸精胺。磷脂酰乙醇胺,特别是含有鸟氨酸的脂质 OL2 和未鉴定的氨基磷脂 APL1 是主要的极性脂。色谱分析后可见黄色色素斑。主要呼吸醌为 MK-6。两个基因组的 G+C 含量为 34 mol%,大小约为 5.8 Mb。与密切相关的模式菌株的 16S rRNA 基因序列比较表明,与 和 具有高度的相关性。所有平均核苷酸同一性(ANI)和数字 DNA-DNA 杂交值与公开可用的 基因组组装相比均低于 90%和 30%,分别。系统发育、表型和化学分类学数据表明,这两株菌代表了该属的一个新型物种,建议将其命名为 sp. nov.。模式菌株为 CIP 105534(=LMG 1342)。 能够将蜜二糖用作唯一碳源的独特能力可以提供一种简单的表型测试来区分 与其最接近的亲缘关系。