从富集培养物中组装的水华束丝藻菌株Clear-A1的宏基因组组装基因组序列
Metagenome-Assembled Genome Sequence of Aphanizomenon flos-aquae Strain Clear-A1, Assembled from an Enrichment Culture.
作者信息
Yemenian Tiffany, Florea Kyra M, Thrash J Cameron, Webb Eric A
机构信息
Department of Biological Sciences, University of Southern California, Los Angeles, California, USA.
Department of Biological Sciences, University of Southern California, Los Angeles, California, USA
出版信息
Microbiol Resour Announc. 2020 Dec 3;9(49):e01124-20. doi: 10.1128/MRA.01124-20.
Abstract
is a significant harmful algal bloom-forming cyanobacterial species. Here, we report the draft genome for a strain of (Clear-A1) from a harmful algal bloom enrichment culture. This metagenome-assembled genome (MAG) sequence comprises 4,452,466 bp in 60 contigs with a GC content of 37.1%.
摘要
是一种形成有害藻华的重要蓝藻物种。在此，我们报告了一株来自有害藻华富集培养物的（Clear - A1）菌株的基因组草图。这个宏基因组组装基因组（MAG）序列由60个重叠群组成，长度为4,452,466 bp，GC含量为37.1%。
相似文献
1
Metagenome-Assembled Genome Sequence of Aphanizomenon flos-aquae Strain Clear-A1, Assembled from an Enrichment Culture.从富集培养物中组装的水华束丝藻菌株Clear-A1的宏基因组组装基因组序列
Microbiol Resour Announc. 2020 Dec 3;9(49):e01124-20. doi: 10.1128/MRA.01124-20.
2
Metagenome-Assembled Genome Sequence of Dolichospermum circinale Strain Clear-D4, Assembled from a Harmful Cyanobacterial Bloom Enrichment Culture.从有害蓝藻水华富集培养物中组装得到的环状鱼腥藻菌株Clear-D4的宏基因组组装基因组序列
Microbiol Resour Announc. 2020 Dec 3;9(49):e01123-20. doi: 10.1128/MRA.01123-20.
3
Metagenome-Assembled Genome Sequence of Bacterium Strain Clear-D13, Assembled from a Harmful Algal Bloom Enrichment Culture.
Microbiol Resour Announc. 2020 Dec 3;9(49):e01118-20. doi: 10.1128/MRA.01118-20.
4
Draft Genome Sequence of the Cyanobacterium Aphanizomenon flos-aquae Strain 2012/KM1/D3, Isolated from the Curonian Lagoon (Baltic Sea).从库尔斯沙嘴泻湖（波罗的海）分离出的水华束丝藻菌株2012/KM1/D3的基因组草图序列
Genome Announc. 2015 Jan 15;3(1):e01392-14. doi: 10.1128/genomeA.01392-14.
5
Draft Genome Sequence of the Toxic Bloom-Forming Cyanobacterium Aphanizomenon flos-aquae NIES-81.
Genome Announc. 2014 Feb 13;2(1):e00044-14. doi: 10.1128/genomeA.00044-14.
6
First report of aphantoxins in China--waterblooms of toxigenic Aphanizomenon flos-aquae in Lake Dianchi.中国颤藻毒素的首次报道——滇池产毒水华束丝藻水华
Ecotoxicol Environ Saf. 2006 Sep;65(1):84-92. doi: 10.1016/j.ecoenv.2005.06.012. Epub 2005 Nov 10.
7
Physiological and morphological response of Aphanizomenon flos-aquae to watermelon (Citrullus lanatus) peel aqueous extract.微囊藻（Aphanizomenon flos-aquae）对西瓜（Citrullus lanatus）皮水提物的生理和形态响应。
Aquat Toxicol. 2020 Aug;225:105548. doi: 10.1016/j.aquatox.2020.105548. Epub 2020 Jun 18.
8
Molecular Verification of Bloom-forming and Their Secondary Metabolites in the Nakdong River.在南道河中发现的形成花的生物及其次生代谢产物的分子验证。
Int J Environ Res Public Health. 2018 Aug 13;15(8):1739. doi: 10.3390/ijerph15081739.
9
The influence of ultrasound frequency and power, on the algal species Microcystis aeruginosa, Aphanizomenon flos-aquae, Scenedesmus subspicatus and Melosira sp.超声频率和功率对铜绿微囊藻、水华鱼腥藻、斜生栅藻和颤藻属物种的影响
Environ Technol. 2013 Sep-Oct;34(17-20):2477-90. doi: 10.1080/09593330.2013.773355.
10
Physiological Responses of Aphanizomenon flos-aquae Under the Stress of Sagittaria sagittifolia Extract.水绵提取物胁迫下水华鱼腥藻的生理响应
Bull Environ Contam Toxicol. 2016 Dec;97(6):870-875. doi: 10.1007/s00128-016-1948-7. Epub 2016 Oct 13.
本文引用的文献
1
MetaSanity: an integrated microbial genome evaluation and annotation pipeline.MetaSanity：一个集成的微生物基因组评估和注释管道。
Bioinformatics. 2020 Aug 1;36(15):4341-4344. doi: 10.1093/bioinformatics/btaa512.
2
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.GTDB-Tk：一个使用基因组分类数据库对基因组进行分类的工具包。
Bioinformatics. 2019 Nov 15;36(6):1925-7. doi: 10.1093/bioinformatics/btz848.
3
KBase: The United States Department of Energy Systems Biology Knowledgebase.KBase：美国能源部系统生物学知识库。
Nat Biotechnol. 2018 Jul 6;36(7):566-569. doi: 10.1038/nbt.4163.
4
metaSPAdes: a new versatile metagenomic assembler.metaSPAdes：一种新型通用宏基因组序列拼接软件
Genome Res. 2017 May;27(5):824-834. doi: 10.1101/gr.213959.116. Epub 2017 Mar 15.
5
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
6
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets.MaxBin 2.0：一种从多个宏基因组数据集中恢复基因组的自动分箱算法。
Bioinformatics. 2016 Feb 15;32(4):605-7. doi: 10.1093/bioinformatics/btv638. Epub 2015 Oct 29.
7
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
8
Identification of harmful cyanobacteria in the Sacramento-San Joaquin Delta and Clear Lake, California by DNA barcoding.通过DNA条形码技术鉴定加利福尼亚州萨克拉门托 - 圣华金河三角洲和清水湖中的有害蓝藻。
Springerplus. 2013 Sep 30;2:491. doi: 10.1186/2193-1801-2-491. eCollection 2013.
Zotero 插件