Department of Environmental Medicine, University of Rochester Medical Center, Rochester, NY, United States of America.
Department of Clinical & Translational Research, University of Rochester Medical Center, Rochester, NY, United States of America.
PLoS One. 2020 Dec 8;15(12):e0243065. doi: 10.1371/journal.pone.0243065. eCollection 2020.
Long non-coding RNAs (lncRNAs) are the varied set of transcripts that play a critical role in biological processes like gene regulation, transcription, post-transcriptional modification, and chromatin remodeling. Recent studies have reported the presence of lncRNAs in the exosomes that are involved in regulating cell-to-cell communication in lung pathologies including lung cancer, chronic obstructive pulmonary disease (COPD), asthma, and idiopathic pulmonary fibrosis (IPF). In this study, we compared the lncRNA profiles in the plasma-derived exosomes amongst non-smokers (NS), cigarette smokers (CS), E-cig users (E-cig), waterpipe smokers (WP) and dual smokers (CSWP) using GeneChip™ WT Pico kit for transcriptional profiling. We found alterations in a distinct set of lncRNAs among subjects exposed to E-cig vapor, cigarette smoke, waterpipe smoke and dual smoke with some overlaps. Gene enrichment analyses of the differentially expressed lncRNAs demonstrated enrichment in the lncRNAs involved in crucial biological processes including steroid metabolism, cell differentiation and proliferation. Thus, the characterized lncRNA profiles of the plasma-derived exosomes from smokers, vapers, waterpipe users, and dual smokers will help identify the biomarkers relevant to chronic lung diseases such as COPD, asthma or IPF.
长非编码 RNA(lncRNA)是一组多样化的转录物,在基因调控、转录、转录后修饰和染色质重塑等生物学过程中发挥着关键作用。最近的研究报告称,lncRNA 存在于外泌体中,参与调节包括肺癌、慢性阻塞性肺疾病(COPD)、哮喘和特发性肺纤维化(IPF)在内的肺部疾病中的细胞间通讯。在这项研究中,我们使用 GeneChip™ WT Pico 试剂盒进行转录谱分析,比较了非吸烟者(NS)、吸烟者(CS)、电子烟使用者(E-cig)、水烟使用者(WP)和双重吸烟者(CSWP)血浆衍生外泌体中的 lncRNA 图谱。我们发现,暴露于电子烟蒸汽、香烟烟雾、水烟和双重烟雾的受试者中存在一组不同的 lncRNA 改变,其中一些存在重叠。差异表达 lncRNA 的基因富集分析表明,lncRNA 参与了关键的生物学过程,包括类固醇代谢、细胞分化和增殖。因此,吸烟者、电子烟使用者、水烟使用者和双重吸烟者血浆衍生外泌体的特征性 lncRNA 图谱将有助于确定与 COPD、哮喘或 IPF 等慢性肺部疾病相关的生物标志物。