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西西伯利亚地区空气微生物组的分类组成和季节动态。

Taxonomic composition and seasonal dynamics of the air microbiome in West Siberia.

机构信息

Singapore Centre for Environmental Life Sciences Engineering (SCELSE), Nanyang Technological University, 60 Nanyang Drive, Singapore, 637551, Singapore.

Research Institute of Medical Genetics, Tomsk National Research Medical Centre, Russian Academy of Sciences, Tomsk, Russian Federation, 634050.

出版信息

Sci Rep. 2020 Dec 9;10(1):21515. doi: 10.1038/s41598-020-78604-8.

Abstract

Here, we describe taxonomical composition, as well as seasonal and diel dynamics of airborne microbial communities in West Siberia. A total of 78 airborne biomass samples from 39 time intervals were analysed, within a temperature range of 48 °C (26 °C to - 22 °C). We observed a 5-170-fold decrease in DNA yield extracted from the airborne biomass in winter compared to summer, nevertheless, yielding sufficient material for metagenomic analysis. The airborne microbial communities included Actinobacteria and Proteobacteria, Ascomycota and Basidiomycota fungi as major components, as well as some Streptophyta plants. In summer, bacterial and fungal plant pathogens, and wood-rotting saprophytes were predominant. In winter, Ascomycota moulds and cold-related or stress environment bacterial species were enriched, while the fraction of wood-rotting and mushroom-forming Basidiomycota fungi was largely reduced. As recently reported for the tropical climate, the airborne microbial communities performed a diel cycle in summer, however, in winter diel dynamics were not observed.

摘要

在这里,我们描述了西西伯利亚地区空气中微生物群落的分类组成、季节性和昼夜动态。在 48°C(26°C 至-22°C)的温度范围内,共分析了 39 个时间间隔的 78 个空气生物量样本。我们观察到,与夏季相比,冬季从空气中生物量中提取的 DNA 产量减少了 5-170 倍,但仍足以进行宏基因组分析。空气中的微生物群落包括放线菌和变形菌、子囊菌和担子菌真菌作为主要成分,以及一些石松植物。在夏季,细菌和真菌植物病原体以及木质腐烂的腐生菌占优势。在冬季,子囊菌霉菌和与寒冷相关或应激环境的细菌物种得到了富集,而木质腐烂和蘑菇形成的担子菌真菌的比例则大大降低。正如最近在热带气候中报道的那样,夏季空气中的微生物群落表现出昼夜循环,但在冬季没有观察到昼夜动态。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9cbb/7726148/318752d084d5/41598_2020_78604_Fig1_HTML.jpg

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