• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过米泽玫瑰线菌AA3_104高质量草图基因组揭示绿弯菌纲厌氧绳菌目中需氧呼吸和光养的复杂历史

Complex History of Aerobic Respiration and Phototrophy in the Chloroflexota Class Anaerolineae Revealed by High-Quality Draft Genome of Ca. Roseilinea mizusawaensis AA3_104.

作者信息

Ward Lewis M, Li-Hau Fátima, Kakegawa Takeshi, McGlynn Shawn E

机构信息

Department of Earth and Planetary Sciences, Harvard University.

Earth-Life Science Institute, Tokyo Institute of Technology.

出版信息

Microbes Environ. 2021;36(3). doi: 10.1264/jsme2.ME21020.

DOI:10.1264/jsme2.ME21020
PMID:34470945
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8446752/
Abstract

Roseilinea is a novel lineage of Chloroflexota known only from incomplete metagenome-assembled genomes (MAGs) and preliminary enrichments. Roseilinea is notable for appearing capable of anoxygenic photoheterotrophy despite being only distantly related to well-known phototrophs in the Chloroflexia class such as Chloroflexus and Roseiflexus. Here, we present a high-quality MAG of a member of Roseilinea, improving our understanding of the metabolic capacity and phylogeny of this genus, and resolving the multiple instances of horizontal gene transfer that have led to its metabolic potential. These data allow us to propose a candidate family for these organisms, Roseilineaceae, within the Anaerolineae class.

摘要

玫瑰线菌是绿弯菌门的一个新谱系,目前仅从不完整的宏基因组组装基因组(MAGs)和初步富集培养物中得知。玫瑰线菌值得注意的是,尽管它与绿弯菌纲中诸如绿弯菌属和玫瑰弯菌属等著名光合营养菌的亲缘关系较远,但似乎具备无氧光异养能力。在此,我们展示了玫瑰线菌属一个成员的高质量MAG,增进了我们对该属代谢能力和系统发育的理解,并解析了导致其代谢潜力的多个水平基因转移实例。这些数据使我们能够为这些生物提出一个候选科——玫瑰线菌科,归属于厌氧绳菌纲。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8917/8446752/955c95eb1572/36_21020-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8917/8446752/1ddbac65f1da/36_21020-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8917/8446752/d22f8dfc5a24/36_21020-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8917/8446752/edbd9a8af483/36_21020-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8917/8446752/955c95eb1572/36_21020-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8917/8446752/1ddbac65f1da/36_21020-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8917/8446752/d22f8dfc5a24/36_21020-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8917/8446752/edbd9a8af483/36_21020-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8917/8446752/955c95eb1572/36_21020-g004.jpg

相似文献

1
Complex History of Aerobic Respiration and Phototrophy in the Chloroflexota Class Anaerolineae Revealed by High-Quality Draft Genome of Ca. Roseilinea mizusawaensis AA3_104.通过米泽玫瑰线菌AA3_104高质量草图基因组揭示绿弯菌纲厌氧绳菌目中需氧呼吸和光养的复杂历史
Microbes Environ. 2021;36(3). doi: 10.1264/jsme2.ME21020.
2
Temperature and Geographic Location Impact the Distribution and Diversity of Photoautotrophic Gene Variants in Alkaline Yellowstone Hot Springs.温度和地理位置影响碱性黄石温泉中光自养基因变体的分布和多样性。
Microbiol Spectr. 2022 Jun 29;10(3):e0146521. doi: 10.1128/spectrum.01465-21. Epub 2022 May 16.
3
Phylogenetic framework and molecular signatures for the class Chloroflexi and its different clades; proposal for division of the class Chloroflexia class. nov. [corrected] into the suborder Chloroflexineae subord. nov., consisting of the emended family Oscillochloridaceae and the family Chloroflexaceae fam. nov., and the suborder Roseiflexineae subord. nov., containing the family Roseiflexaceae fam. nov.类绿弯菌门及其不同分支的系统发育框架和分子特征;提议将类绿弯菌门(Chloroflexia class. nov. [corrected])划分为两个亚目,即绿弯菌亚目(Chloroflexineae subord. nov.),包括修正后的颤螺旋菌科(Oscillochloridaceae)和绿弯菌科(Chloroflexaceae fam. nov.),以及玫瑰弯菌亚目(Roseiflexineae subord. nov.),包含玫瑰弯菌科(Roseiflexaceae fam. nov.)。
Antonie Van Leeuwenhoek. 2013 Jan;103(1):99-119. doi: 10.1007/s10482-012-9790-3. Epub 2012 Aug 19.
4
Metagenomic analysis further extends the role of Chloroflexi in fundamental biogeochemical cycles.宏基因组分析进一步拓展了绿弯菌门在基础生物地球化学循环中的作用。
Environ Res. 2022 Jun;209:112888. doi: 10.1016/j.envres.2022.112888. Epub 2022 Feb 7.
5
Candidatus Anthektikosiphon siderophilum OHK22, a New Member of the Chloroflexi Family Herpetosiphonaceae from Oku-okuhachikurou Onsen.候选嗜铁钩端螺旋菌 OHK22,来自大鹿九十九里温泉的绿弯菌科噬热菌科的新成员。
Microbes Environ. 2020;35(3). doi: 10.1264/jsme2.ME20030.
6
Evolution of the 3-hydroxypropionate bicycle and recent transfer of anoxygenic photosynthesis into the Chloroflexi.3-羟基丙酸循环的演变和最近厌氧光合作用向绿屈挠菌的转移。
Proc Natl Acad Sci U S A. 2017 Oct 3;114(40):10749-10754. doi: 10.1073/pnas.1710798114. Epub 2017 Sep 18.
7
Biogeography of thermophilic phototrophic bacteria belonging to Roseiflexus genus.属于红弯菌属的嗜热光合细菌的生物地理学。
FEMS Microbiol Ecol. 2016 Mar;92(3). doi: 10.1093/femsec/fiw012. Epub 2016 Jan 28.
8
Temperature impacts community structure and function of phototrophic Chloroflexi and Cyanobacteria in two alkaline hot springs in Yellowstone National Park.温度对黄石国家公园两个碱性热泉中光养 Chloroflexi 和蓝细菌的群落结构和功能的影响。
Environ Microbiol Rep. 2020 Oct;12(5):503-513. doi: 10.1111/1758-2229.12863. Epub 2020 Jul 26.
9
Comparative genomics provides evidence for the 3-hydroxypropionate autotrophic pathway in filamentous anoxygenic phototrophic bacteria and in hot spring microbial mats.比较基因组学为丝状无氧光合细菌和温泉微生物垫中的3-羟基丙酸自养途径提供了证据。
Environ Microbiol. 2007 Aug;9(8):2067-78. doi: 10.1111/j.1462-2920.2007.01323.x.
10
'Candidatus Oscillochloris kuznetsovii' a novel mesophilic filamentous anoxygenic phototrophic Chloroflexales bacterium from Arctic coastal environments.'Candidatus Oscillochloris kuznetsovii',一种新型的嗜冷丝状厌氧光养 Chloroflexales 细菌,来自北极沿海环境。
FEMS Microbiol Lett. 2020 Oct 21;367(19). doi: 10.1093/femsle/fnaa158.

引用本文的文献

1
Novel hot spring Thermoproteota support vertical inheritance of ammonia oxidation and carbon fixation in Nitrososphaeria.新型温泉热变形菌门支持亚硝化球菌纲中氨氧化和碳固定的垂直遗传。
Access Microbiol. 2025 Apr 29;7(4). doi: 10.1099/acmi.0.000931.v4. eCollection 2025.
2
A comprehensive overview of the Chloroflexota community in wastewater treatment plants worldwide.全球污水处理厂中 Chloroflexota 群落的综合概述。
mSystems. 2023 Dec 21;8(6):e0066723. doi: 10.1128/msystems.00667-23. Epub 2023 Nov 22.
3
Atmospheric chemosynthesis is phylogenetically and geographically widespread and contributes significantly to carbon fixation throughout cold deserts.

本文引用的文献

1
Microbial mats in the Turks and Caicos Islands reveal diversity and evolution of phototrophy in the Chloroflexota order Aggregatilineales.特克斯和凯科斯群岛的微生物垫揭示了绿弯菌纲聚线菌目的光合营养多样性和进化。
Environ Microbiome. 2020 Apr 16;15(1):9. doi: 10.1186/s40793-020-00357-8.
2
Granick revisited: Synthesizing evolutionary and ecological evidence for the late origin of bacteriochlorophyll via ghost lineages and horizontal gene transfer.格兰尼克再探:通过幽灵谱系和水平基因转移,综合进化和生态证据表明细菌叶绿素起源较晚。
PLoS One. 2021 Jan 28;16(1):e0239248. doi: 10.1371/journal.pone.0239248. eCollection 2021.
3
大气化能合成在系统发生和地理上广泛存在,并对寒冷荒漠地区的碳固定做出了重大贡献。
ISME J. 2022 Nov;16(11):2547-2560. doi: 10.1038/s41396-022-01298-5. Epub 2022 Aug 6.
4
Temperature and Geographic Location Impact the Distribution and Diversity of Photoautotrophic Gene Variants in Alkaline Yellowstone Hot Springs.温度和地理位置影响碱性黄石温泉中光自养基因变体的分布和多样性。
Microbiol Spectr. 2022 Jun 29;10(3):e0146521. doi: 10.1128/spectrum.01465-21. Epub 2022 May 16.
A complete domain-to-species taxonomy for Bacteria and Archaea.
细菌和古菌的完整域到种分类 taxonomy。
Nat Biotechnol. 2020 Sep;38(9):1079-1086. doi: 10.1038/s41587-020-0501-8. Epub 2020 Apr 27.
4
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.GTDB-Tk:一个使用基因组分类数据库对基因组进行分类的工具包。
Bioinformatics. 2019 Nov 15;36(6):1925-7. doi: 10.1093/bioinformatics/btz848.
5
Geochemical and Metagenomic Characterization of Jinata Onsen, a Proterozoic-Analog Hot Spring, Reveals Novel Microbial Diversity including Iron-Tolerant Phototrophs and Thermophilic Lithotrophs.吉纳塔温泉的地球化学和宏基因组特征分析,揭示了包括耐铁光合生物和嗜热岩石营养生物在内的新型微生物多样性,该温泉为一处元古代类似温泉。
Microbes Environ. 2019 Sep 25;34(3):278-292. doi: 10.1264/jsme2.ME19017. Epub 2019 Aug 14.
6
Evolutionary Implications of Anoxygenic Phototrophy in the Bacterial Phylum Eremiobacterota (WPS-2).厌氧光合在埃雷米杆菌门细菌(WPS-2)中的进化意义
Front Microbiol. 2019 Jul 23;10:1658. doi: 10.3389/fmicb.2019.01658. eCollection 2019.
7
The trouble with oxygen: The ecophysiology of extant phototrophs and implications for the evolution of oxygenic photosynthesis.氧气的问题:现存光合生物的生理生态学及其对产氧光合作用进化的意义。
Free Radic Biol Med. 2019 Aug 20;140:233-249. doi: 10.1016/j.freeradbiomed.2019.05.003. Epub 2019 May 9.
8
The evolution and productivity of carbon fixation pathways in response to changes in oxygen concentration over geological time.地质时间内,针对氧浓度变化,碳固定途径的演变和生产力。
Free Radic Biol Med. 2019 Aug 20;140:188-199. doi: 10.1016/j.freeradbiomed.2019.01.049. Epub 2019 Feb 18.
9
Draft genome sequences of ' Chloroploca asiatica' and ' Viridilinea mediisalina', candidate representatives of the order: phylogenetic and taxonomic implications.“亚洲绿斑菌”和“中绿线菌”的基因组序列草图,该目候选代表:系统发育和分类学意义
Stand Genomic Sci. 2018 Oct 11;13:24. doi: 10.1186/s40793-018-0329-8. eCollection 2018.
10
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life.基于基因组系统发育的标准化细菌分类学极大地改变了生命之树。
Nat Biotechnol. 2018 Nov;36(10):996-1004. doi: 10.1038/nbt.4229. Epub 2018 Aug 27.