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犬类和人类膀胱癌中差异表达基因与蛋白质的比较荟萃分析及分析

A Comparative Meta-Analysis and Analysis of Differentially Expressed Genes and Proteins in Canine and Human Bladder Cancer.

作者信息

Vitti Gambim Victoria, Laufer-Amorim Renee, Fonseca Alves Ricardo Henrique, Grieco Valeria, Fonseca-Alves Carlos Eduardo

机构信息

Department of Veterinary Surgery and Animal Reproduction, School of Veterinary Medicine and Animal Science, São Paulo State University-UNESP, Botucatu, Brazil.

Department of Veterinary Clinic, School of Veterinary Medicine and Animal Science, São Paulo State University-UNESP, Botucatu, Brazil.

出版信息

Front Vet Sci. 2020 Nov 16;7:558978. doi: 10.3389/fvets.2020.558978. eCollection 2020.

Abstract

Canine and human bladder cancer present similar anatomical, morphological, and molecular characteristics, and dogs can be considered a model for human bladder cancer. However, the veterinary literature lacks information regarding cross-validation analysis between human and canine large-scale data. Therefore, this research aimed to perform a meta-analysis of the canine literature on bladder cancer, identifying genes and proteins previously evaluated in these studies. In addition, we also performed a cross-validation of the canine transcriptome data and the human data from The Cancer Genome Atlas (TCGA) to identify potential markers for both species. The meta-analysis was performed using the following indexing terms: "bladder" AND "carcinoma" AND "dog" in different international databases, and 385 manuscripts were identified in our initial search. Then, several inclusion criteria were applied, and only 25 studies met these criteria. Among these studies, five presented transcriptome data, and 20 evaluated only isolated genes or proteins. Regarding the studies involving isolated protein analysis, the HER-2 protein was the most studied (3/20), followed by TAG-72 (2/20), COX-2 (2/20), survivin (2/20), and CK7 (2/20), and the remaining nine studies evaluated one isolated protein each. Regarding the cross-validation analysis of human and canine transcriptome data, we identified 35 dysregulated genes, including , and . Our results demonstrate that the canine literature on bladder cancer previously focused on the evaluation of isolated markers with no association with patient survival. This limitation may be related to the lack of a homogenous protocol for treating patients and the lack of follow-up during treatment. In addition, the lack of information regarding tumor muscle invasion can be considered an important limitation when comparing human and canine bladder tumors. Our analysis involving canine and human transcriptome data provided several genes with the potential to be markers for both human and canine bladder tumors, and these genes should be considered for future studies on canine bladder cancer.

摘要

犬类和人类膀胱癌具有相似的解剖学、形态学和分子特征,犬类可被视为人类膀胱癌的模型。然而,兽医文献缺乏关于人类和犬类大规模数据之间交叉验证分析的信息。因此,本研究旨在对犬类膀胱癌文献进行荟萃分析,识别这些研究中先前评估过的基因和蛋白质。此外,我们还对犬类转录组数据与来自癌症基因组图谱(TCGA)的人类数据进行了交叉验证,以识别这两个物种的潜在标志物。荟萃分析使用以下索引词在不同国际数据库中进行:“膀胱”、“癌”和“犬”,在我们的初步搜索中识别出385篇手稿。然后,应用了几个纳入标准,只有25项研究符合这些标准。在这些研究中,5项呈现了转录组数据,20项仅评估了单个基因或蛋白质。关于涉及单个蛋白质分析的研究,HER-2蛋白研究最多(3/20),其次是TAG-72(2/20)、COX-2(2/20)、生存素(2/20)和CK7(2/20),其余9项研究各评估了一种单个蛋白质。关于人类和犬类转录组数据的交叉验证分析,我们识别出35个失调基因,包括……。我们的结果表明,先前关于犬类膀胱癌的文献主要集中在对与患者生存无关的单个标志物的评估上。这一局限性可能与缺乏治疗患者的统一方案以及治疗期间缺乏随访有关。此外,在比较人类和犬类膀胱肿瘤时,缺乏关于肿瘤肌肉浸润的信息可被视为一个重要局限性。我们对犬类和人类转录组数据的分析提供了几个有可能成为人类和犬类膀胱肿瘤标志物的基因,这些基因应在未来犬类膀胱癌研究中予以考虑。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/23db/7701042/7edae9719304/fvets-07-558978-g0001.jpg

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