Department of Biological Sciences, Seton Hall University, 400 South Orange Ave, South Orange, NJ 07076, USA.
Department of Biological Sciences, Seton Hall University, 400 South Orange Ave, South Orange, NJ 07076, USA; Institute for Neuroimmunepharmacology, Seton Hall University, 400 South Orange Ave, South Orange, NJ 07076, USA.
Cancer Genet. 2021 Apr;252-253:1-5. doi: 10.1016/j.cancergen.2020.12.001. Epub 2020 Dec 6.
Technical advances in genome sequencing, in particular whole-genome sequencing (WGS), provide adequate tools to understanding cancer at the molecular level while specifically focusing on genetic variants that contribute to the causation and progression of pathogenic cancers. Multiple myeloma (MM), a malignant disease of plasma cells that is marked as rare yet incurable, may be diagnosed by WGS tools, as this cancer is associated with chromosomal translocations and mutations in specific protein-coding genes. Among these protein-coding genes, many are known to be responsible for cell cycle regulation in MM. The initial significant protein-coding mutations were found in NRAS, KRAS and TP53 and later reported in FAM46C, DIS3, CCND1, PNRC1, ALOX12B, HLA-A and MAGED1. Here, we report gene network associations of MM using Qiagen's Ingenuity Pathway Analysis (IPA) software and compared biomarker information reported in IPA for these protein-coding genes (NRAS, TP53 and KRAS). Using Qiagen's Ingenuity Variant Analysis (IVA), we characterized cancer driver variants in MT-ND1 as likely pathogenic or variants of uncertain significance.
技术进步在基因组测序方面,特别是全基因组测序(WGS),为在分子水平上了解癌症提供了充分的工具,同时特别关注导致致病性癌症发生和发展的遗传变异。多发性骨髓瘤(MM)是一种浆细胞恶性疾病,虽然罕见但无法治愈,可通过 WGS 工具进行诊断,因为这种癌症与染色体易位和特定蛋白编码基因的突变有关。在这些蛋白编码基因中,许多已知在 MM 中负责细胞周期调控。最初在 NRAS、KRAS 和 TP53 中发现了重要的蛋白编码突变,后来在 FAM46C、DIS3、CCND1、PNRC1、ALOX12B、HLA-A 和 MAGED1 中也有报道。在这里,我们使用 Qiagen 的 Ingenuity Pathway Analysis(IPA)软件报告了 MM 的基因网络关联,并比较了 IPA 报告的这些蛋白编码基因(NRAS、TP53 和 KRAS)的生物标志物信息。使用 Qiagen 的 Ingenuity Variant Analysis(IVA),我们对 MT-ND1 中的癌症驱动变异进行了特征分析,认为这些变异可能是致病性的或意义不明的变异。