Cheng Guangwen, Dai Meng, Xiao Tianlei, Fu Tiantian, Han Hong, Wang Yuanyuan, Wang Wenping, Ding Hong, Yu Jinhua
Department of Ultrasound, Huashan Hospital, Fudan University, No. 12 Urumqi Middle Road, Shanghai 200040, China.
Department of Electronic Engineering, Fudan University, No. 220, Handan Road, Shanghai 200433, China.
Comput Methods Programs Biomed. 2021 Feb;199:105875. doi: 10.1016/j.cmpb.2020.105875. Epub 2020 Dec 2.
Chronic liver disease is an important cause of liver failure and death worldwide, and liver fibrosis is a common pathological process of most chronic liver diseases. There still lacks a useful tool for evaluating liver fibrosis progression precisely and non-invasively. The purpose of this study was to explore the use of ultrasound radio frequency (RF) signals combined with deep learning approach to evaluate the degree of liver fibrosis quantitatively.
In this study, by extracting the output of deep learning models as a prediction value, a quantitative liver fibrosis prediction method was achieved based on the bidirectional long short-term memory (Bi-LSTM) network to analyze radio frequency (RF) signals. The dataset consisted of 160 sets of ultrasound RF signals of rat livers, including five fibrosis stages 0-4, upon pathological diagnosis. In total, 150 sets of RF signals were used to train four deep learning classification models, the output of which contained quantitative information. In each training stage of the four models, a large number of signal segments were extracted from the 150 sets and divided randomly into training and validation sets in a ratio of 80:20. Ten sets of RF data using the gold standard of quantitative fibrosis parameter (q-FP) of liver tissues were left for independent testing. To validate the proposed method, correlation analysis was carried out between q-FP and the quantitative prediction results based on the independent test data.
The accuracy of the four deep learning networks using the training and validation data was above 0.83 and 0.80, and the corresponding areas under the receiver operating characteristic curves were higher than 0.95 and 0.93, respectively. For the quantitative analysis in the independent test set, the determination coefficient, R, of the linear regression analysis between the quantitative prediction results and q-FP was above 0.93. liver fibrosis is a common pathological process of most chronic liver diseases.
This study indicates that a prediction system based on ultrasound RF signals and a deep learning approach is promising for realizing quantitative and visualized diagnosis of liver fibrosis, which would be of great value in monitoring liver fibrosis non-invasively.
慢性肝病是全球肝衰竭和死亡的重要原因,肝纤维化是大多数慢性肝病常见的病理过程。目前仍缺乏一种精确且无创评估肝纤维化进展的有效工具。本研究旨在探讨利用超声射频(RF)信号结合深度学习方法对肝纤维化程度进行定量评估。
在本研究中,通过提取深度学习模型的输出作为预测值,基于双向长短期记忆(Bi-LSTM)网络实现了一种用于分析射频(RF)信号的肝纤维化定量预测方法。数据集由160组大鼠肝脏的超声RF信号组成,经病理诊断包括0-4五个纤维化阶段。总共150组RF信号用于训练四个深度学习分类模型,其输出包含定量信息。在四个模型的每个训练阶段,从150组信号中提取大量信号段,并以80:20的比例随机分为训练集和验证集。留下10组使用肝脏组织定量纤维化参数(q-FP)金标准的RF数据用于独立测试。为验证所提出的方法,基于独立测试数据对q-FP与定量预测结果进行相关性分析。
使用训练和验证数据的四个深度学习网络的准确率分别高于0.83和0.80,相应的受试者工作特征曲线下面积分别高于0.95和0.93。对于独立测试集中的定量分析,定量预测结果与q-FP之间线性回归分析的决定系数R高于0.93。肝纤维化是大多数慢性肝病常见的病理过程。
本研究表明,基于超声RF信号和深度学习方法的预测系统有望实现肝纤维化的定量和可视化诊断,这在无创监测肝纤维化方面具有重要价值。