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竹子(禾本科竹亚科)的完整叶绿体基因组序列

Complete chloroplast genome sequence of bamboo (Gramineae Bambusoideae).

作者信息

Lin Ru-Qiang, Jiang Yu-Ting, Zeng Qin-Meng, Liu Bin, Liu Zhong-Jian, Chen Shi-Pin

机构信息

College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, China.

Camellia Oleifera Research Center at College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, China.

出版信息

Mitochondrial DNA B Resour. 2019 Sep 6;4(2):2874-2875. doi: 10.1080/23802359.2019.1660264.

DOI:10.1080/23802359.2019.1660264
PMID:33365769
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7707846/
Abstract

is one of the most economical and ornamental significant bamboo. It has the characteristics of annual flowering but no death. Here, we report on the first complete chloroplast (cp) genome of . Its full-length of 139,458 bp, include large single-copy (LSC) region of 83,279 bp, small single-copy (SSC) region of 12,143bp, a pair of invert repeats (IR) regions of 22,018bp. Plastid genome contains 264 genes, 170 protein-coding genes, 78 tRNA genes, and 16 rRNA genes. The maximum likelihood phylogenetic analysis shows that was sister to all other species of Bambusoideae.

摘要

是最具经济价值和观赏价值的重要竹种之一。它具有每年开花但不死亡的特性。在此,我们报道了 的首个完整叶绿体(cp)基因组。其全长为139,458 bp,包括83,279 bp的大单拷贝(LSC)区域、12,143 bp的小单拷贝(SSC)区域以及一对22,018 bp的反向重复(IR)区域。质体基因组包含264个基因,其中170个蛋白质编码基因、78个tRNA基因和16个rRNA基因。最大似然系统发育分析表明, 与竹亚科的所有其他物种为姐妹关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d1a2/7707846/bdf0fc1ac015/TMDN_A_1660264_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d1a2/7707846/bdf0fc1ac015/TMDN_A_1660264_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d1a2/7707846/bdf0fc1ac015/TMDN_A_1660264_F0001_B.jpg

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本文引用的文献

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Bandage: interactive visualization of de novo genome assemblies.绷带:从头基因组组装的交互式可视化
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