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(竹亚科)的完整叶绿体基因组序列及系统发育分析

Complete chloroplast genome sequence and phylogenetic analysis of (Bambusoideae).

作者信息

Zhao Wanqi, Cao Binbin, Yang Guangyao, Zhang Wengen, Yu Fen

机构信息

Jiangxi Provincial Key Laboratory for Bamboo Germplasm Resources and Utilization, Forestry College, Jiangxi Agricultural University, Nanchang, PR China.

出版信息

Mitochondrial DNA B Resour. 2021 Mar 11;6(3):824-825. doi: 10.1080/23802359.2021.1884017.

DOI:10.1080/23802359.2021.1884017
PMID:33763591
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7954435/
Abstract

is an ornamental shrubby bamboo endemic to southern China. In this study, the complete chloroplast genome (cpDNA) sequence of was first reported. The cpDNA is 139,594 bp in length, including a small single-copy (SSC) region of 12,820 bp and a large single-copy (LSC) region of 83,196 bp, which were separated by a pair of inverted repeat (IR) regions of 21,789 bp. The genome contains 140 genes, consisting of 93 protein-coding genes, seven ribosomal RNA (rRNA) genes, and 40 transfer RNA (tRNA) genes. The phylogenetic analysis showed that is highly clustered in the clade, sister to .

摘要

是一种中国南方特有的观赏灌木竹。在本研究中,首次报道了其完整的叶绿体基因组(cpDNA)序列。cpDNA长度为139,594 bp,包括一个12,820 bp的小单拷贝(SSC)区域和一个83,196 bp的大单拷贝(LSC)区域,它们被一对21,789 bp的反向重复(IR)区域隔开。该基因组包含140个基因,由93个蛋白质编码基因、7个核糖体RNA(rRNA)基因和40个转移RNA(tRNA)基因组成。系统发育分析表明,在分支中高度聚集,与 为姐妹关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddcf/7954435/b6d9da6b3fb8/TMDN_A_1884017_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddcf/7954435/b6d9da6b3fb8/TMDN_A_1884017_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddcf/7954435/b6d9da6b3fb8/TMDN_A_1884017_F0001_C.jpg

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本文引用的文献

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2
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Mitochondrial DNA B Resour. 2020 Feb 11;5(1):1119-1121. doi: 10.1080/23802359.2020.1726224.
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Two plastomes of and reconstruction of phylogenic relationship amongst selected species using genome skimming.
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Mitochondrial DNA B Resour. 2019 Dec 9;5(1):69-70. doi: 10.1080/23802359.2019.1696244.
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