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一种商业开发的观赏植物(石竹目:紫茉莉科)的完整叶绿体基因组。

The complete chloroplast genome of a commercially exploited ornamental plant, (Caryophyllales: Nyctaginaceae).

作者信息

Ni Jianzhong, Lee Shiou Yih, Hu Xing, Wang Wei, Zhang Jifang, Ruan Lin, Dai Seping, Liu Guofeng

机构信息

Guangzhou Institute of Forestry and Landscape Architecture, Guangzhou, China.

State Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen University, Guangzhou, China.

出版信息

Mitochondrial DNA B Resour. 2019 Oct 7;4(2):3390-3391. doi: 10.1080/23802359.2019.1674721.

DOI:10.1080/23802359.2019.1674721
PMID:33366007
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7707241/
Abstract

is an ornamental plant that is domesticated in many tropical and sub-tropical countries. The focus on its breeding programmes has overshadowed genetic studies of this important species. In this study, we reported on the complete chloroplast (cp) genome of . The cp genome is 154,763 bp in size, comprised of a large single copy (LSC) region of 85,921 bp, a small single copy (SSC) region of 18,018 bp, and a pair of inverted repeat (IR) regions of 25,412 bp each. A total of 131 genes were predicted, including 37 tRNA, 8 rRNA, and 86 protein-coding genes. Phylogenetic analysis revealed that is placed under Nyctaginaceae and sister to under a strong bootstrap support.

摘要

是一种在许多热带和亚热带国家被驯化的观赏植物。对其育种计划的关注使对这个重要物种的遗传研究黯然失色。在本研究中,我们报道了[植物名称]的完整叶绿体(cp)基因组。该cp基因组大小为154,763 bp,由一个85,921 bp的大单拷贝(LSC)区域、一个18,018 bp的小单拷贝(SSC)区域和一对各为25,412 bp的反向重复(IR)区域组成。总共预测了131个基因,包括37个tRNA、8个rRNA和86个蛋白质编码基因。系统发育分析表明,[植物名称]被置于紫茉莉科之下,在强烈的自展支持下与[另一植物名称]为姐妹关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0692/7707241/438217478b92/TMDN_A_1674721_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0692/7707241/438217478b92/TMDN_A_1674721_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0692/7707241/438217478b92/TMDN_A_1674721_F0001_B.jpg

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NOVOPlasty: de novo assembly of organelle genomes from whole genome data.NOVOPlasty:从头组装细胞器基因组的全基因组数据。
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野生和栽培紫茉莉科植物叶绿体全基因组序列的比较分析
Plants (Basel). 2020 Nov 28;9(12):1671. doi: 10.3390/plants9121671.
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