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对来自古巴的濒危单型苏铁物种古巴泽米(泽米科)完整叶绿体基因组的特征分析。

Characterization of the complete chloroplast genome of (Zamiaceae), an Endangered monotypic cycad species from Cuba.

作者信息

Liu Jian, Lindstrom Anders J, Gong Xun

机构信息

Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China.

Key Laboratory of Economic Plants and Biotechnology, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China.

出版信息

Mitochondrial DNA B Resour. 2019 Oct 23;4(2):3695-3697. doi: 10.1080/23802359.2019.1679683.

Abstract

is the monotypic species from the critical endangered and endemic cycad genus in Cuba, an important taxon to study the evolution of extant gymnosperms. Here we report the complete chloroplast sequences of and characterize the genome structure of this species. The genome size of is 165,667 bp in length which contains 135 genes, including 88 protein-coding genes, eight ribosomal RNA genes and 39 transfer RNA genes. The GC content of this genome is 39.6%. Phylogenomic study shows is mostly closely related to the cycad genus , which corresponds to previous studies based on multiple nuclear genes and combined plastid and nuclear evidence. The plastome information of offered by this study can contribute to further comparative chloroplast genome in cycads/gymnosperms as well as conservation genetic studies of .

摘要

是来自古巴极度濒危且特有的苏铁属的单型物种,是研究现存裸子植物进化的重要分类群。在此我们报告了该物种的完整叶绿体序列并对其基因组结构进行了表征。该物种的基因组长度为165,667 bp,包含135个基因,其中包括88个蛋白质编码基因、8个核糖体RNA基因和39个转运RNA基因。该基因组的GC含量为39.6%。系统基因组学研究表明该物种与苏铁属的关系最为密切,这与之前基于多个核基因以及叶绿体和核证据相结合的研究结果一致。本研究提供的该物种的质体基因组信息有助于进一步开展苏铁/裸子植物叶绿体基因组的比较研究以及该物种的保护遗传学研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6848/7707608/12e24c631afd/TMDN_A_1679683_F0001_B.jpg

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