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多年生药用草本植物(葫芦科)的完整叶绿体基因组序列

Complete chloroplast genome sequence of (Cucurbitaceae), a perennial medicinal herb.

作者信息

Shi Yancai, Zou Rong, Liu Bingbing

机构信息

Institute of Loess Plateau, Shanxi University, Taiyuan, Shanxi, China.

Guangxi Institute of Botany, Guangxi Zhuang Autonomous Region and Chinese Academy of Sciences, Guilin, China.

出版信息

Mitochondrial DNA B Resour. 2019 Nov 12;4(2):3967-3968. doi: 10.1080/23802359.2019.1688726.

Abstract

(Cucurbitaceae) is a perennial medicinal herb widely distributed in China. It's well known for its medicinal values due to contains important medicinal components gypenosides. Here, we first report and characterize its complete chloroplast genome based on Illumina paired-end sequencing data. The complete plastid genome was 154,457 bp, which contained inverted repeats (IR) of 25,603 bp separated by a large single-copy (LSC) and a small single copy (SSC) of 84,998 bp and 18,253 bp, respectively. The cpDNA contains 132 genes, comprising 81 protein-coding genes, 37 tRNA genes, 8 rRNA genes and six processed pseudogenes. The overall GC content of the plastome is 37.1%. The phylogenetic analysis of 17 selected chloroplast genomes demonstrated that is closely related to the congeneric . .

摘要

(葫芦科)是一种多年生药用草本植物,在中国广泛分布。由于含有重要的药用成分绞股蓝皂苷,它以其药用价值而闻名。在此,我们首次基于Illumina双端测序数据报道并表征了其完整的叶绿体基因组。完整的质体基因组为154,457 bp,其中包含25,603 bp的反向重复序列(IR),分别由84,998 bp的大单拷贝(LSC)和18,253 bp的小单拷贝(SSC)隔开。叶绿体DNA包含132个基因,包括81个蛋白质编码基因、37个tRNA基因、8个rRNA基因和6个加工假基因。质体基因组的总体GC含量为37.1%。对17个选定叶绿体基因组的系统发育分析表明, 与同属的 密切相关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e79f/7707782/8cee5fd99347/TMDN_A_1688726_F0001_B.jpg

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