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珍稀野生观赏兰花(Lindley)H.G.赖兴巴赫(兰科)完整叶绿体基因组序列的特征分析与系统发育分析

Characterization and phylogenetic analysis of the complete plastome sequence of (Lindley) H. G. Reichenbach (Orchidaceae), a rare wild ornamental orchid.

作者信息

Zhang Ruiyang

机构信息

Agriculture & Biological Engineering College, Jinhua Polytechnic, Jinhua, PR China.

出版信息

Mitochondrial DNA B Resour. 2019 Nov 13;4(2):4039-4040. doi: 10.1080/23802359.2019.1688729.

DOI:10.1080/23802359.2019.1688729
PMID:33366307
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7707714/
Abstract

(Lindley) H. G. Reichenbach is a wild ornamental orchid, and it is a rare plant species with small populations. In this study, the complete chloroplast genome sequence of was assembled using short reads produced by high-throughput sequencing technologies. The whole chloroplast genome was 159,948 bp in length with a typical quadripartite structure, which consisted of a large single-copy (LSC), a small single-copy (SSC), and two inverted repeats (IRs). The sizes of LSC, SSC, and IR were 87,532, 18,852, and 26781 bp, with GC contents of 35.0%, 30.3%, and 43.2%, respectively. There were a total of 135 genes, which included 88 protein-coding genes, 8 rDNA genes, 38 tRNA genes, and a pseudogene. A phylogenetic tree was generated using the maximum-likelihood method, and the results revealed that was sister to and , with a support rate of 100%.

摘要

(林德利)H.G.赖兴巴赫氏兰是一种野生观赏兰花,是一种种群数量稀少的珍稀植物物种。在本研究中,利用高通量测序技术产生的短读长序列组装了[该物种名称缺失]的完整叶绿体基因组序列。整个叶绿体基因组长度为159,948 bp,具有典型的四分体结构,由一个大单拷贝区(LSC)、一个小单拷贝区(SSC)和两个反向重复序列(IR)组成。LSC、SSC和IR的大小分别为87,532、18,852和26,781 bp,GC含量分别为35.0%、30.3%和

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f913/7707714/80bb64019f4d/TMDN_A_1688729_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f913/7707714/80bb64019f4d/TMDN_A_1688729_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f913/7707714/80bb64019f4d/TMDN_A_1688729_F0001_C.jpg

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本文引用的文献

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tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences.tRNAscan-SE:在基因组序列中搜索tRNA基因。
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