重要育种亲本[品种名称]的叶绿体全基因组序列
The complete chloroplast genome sequence of Var. , an important breeding parent.
作者信息
Liu Yixin, Huang Jie, Moe The Su, Khan Mohammad Sayyar, Xue Jing, Zhang Xiuhai, Du Yunpeng
机构信息
Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Beijing Functional Flower Engineering Technology Research Center, Beijing Agro-Biotechnology Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China.
Division for Achievements Transformation and Promotion, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China.
出版信息
Mitochondrial DNA B Resour. 2019 Dec 9;5(1):71-72. doi: 10.1080/23802359.2019.1696245.
var. is an important breeding parent with high ornamental and edible value in worldwide. In this study, we reported a complete chloroplast genome of var. , which was assembled using the next-generation sequencing data. The whole genome is 152,912 bp in length and includes one large single copy (LSC) region of 70,693 bp, one small single copy (SSC) region of 17,517 bp, and a pair of inverted repeat (IR) region of 26,539 bp. A total of 131 functional genes were encoded, consisting of 76 protein-coding genes, 36 transfer RNA genes, and eight ribosomal RNA genes. The overall AT content of the chloroplast genome is 63.00%. In the maximum likelihood, a strong phylogenetic signal showed that var. is a species of , which is the first major genome in section
变种在全球范围内是一种具有高观赏和食用价值的重要育种亲本。在本研究中，我们报道了变种的一个完整叶绿体基因组，其是利用二代测序数据组装而成。整个基因组长度为152,912 bp，包括一个70,693 bp的大单拷贝（LSC）区域、一个17,517 bp的小单拷贝（SSC）区域以及一对26,539 bp的反向重复（IR）区域。总共编码了131个功能基因，包括76个蛋白质编码基因、36个转运RNA基因和8个核糖体RNA基因。叶绿体基因组的总体AT含量为63.00%。在最大似然法中，一个强烈的系统发育信号表明变种是某属的一个物种，这是该组中的首个主要基因组
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