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(望春玉兰)丹迪(木兰科)的完整质体基因组序列

Complete plastome sequence of (W.C. Cheng) Dandy (Magnoliaceae).

作者信息

Wang Guo-Qing, Zhang Xiao-Feng, Wang Hong-Xin, Zhu Zhi-Xin, Wang Hua-Feng

机构信息

Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, School of Life and Pharmaceutical Sciences, Hainan University, Haikou, China.

出版信息

Mitochondrial DNA B Resour. 2019 Sep 2;4(2):2819-2820. doi: 10.1080/23802359.2019.1660596.

Abstract

is an evergreen tree with 25 meters heights. It is distributed in tropical 1200-1300 m. Mount Emei. And it has been ranked as a CR (Critically Endangered) species in China. Here, we report and characterize the complete plastome of in an effort to provide genomic resources useful for promoting its systematics research. The plastome of s found to possess a total length 160,021 bp with the typical quadripartite structure of angiosperms, contains two Inverted Repeats (IRs) of 26,336 bp, a Large Single-Copy (LSC) region of 88,061 bp and a Small Single-Copy (SSC) region of 19,288 bp. The plastome contains 114 genes, consisting of 80 unique protein-coding genes, 30 unique tRNA genes and 4 unique rRNA genes. The overall A/T content in the plastome of is 60.70%. The phylogenetic analysis indicated that is close to within Magnoliaceae in this study. The complete plastome sequence of will provide a useful resource for the conservation genetics of this species as well as for the phylogenetic studies of Magnoliaceae.

摘要

它是一种高达25米的常绿乔木。分布于热带地区海拔1200 - 1300米的峨眉山。在中国,它已被列为极危(CR)物种。在此,我们报道并描述了其完整的叶绿体基因组,以期提供有助于推动其系统发育研究的基因组资源。发现该物种的叶绿体基因组全长160,021 bp,具有被子植物典型的四分体结构,包含两个26,336 bp的反向重复序列(IRs)、一个88,061 bp的大单拷贝(LSC)区域和一个19,288 bp的小单拷贝(SSC)区域。该叶绿体基因组包含114个基因,由80个独特的蛋白质编码基因、30个独特的tRNA基因和4个独特的rRNA基因组成。该物种叶绿体基因组的总体A/T含量为60.70%。系统发育分析表明,在本研究中,该物种在木兰科内与某物种亲缘关系较近。该物种完整的叶绿体基因组序列将为该物种的保护遗传学以及木兰科的系统发育研究提供有用的资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ccd/7706837/81055c9a190b/TMDN_A_1660596_F0001_B.jpg

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