中国一种濒危物种的完整叶绿体基因组序列。
The complete chloroplast genome sequence of : an endangered species in China.
作者信息
Sima Yongkang, Li Yunqing, Yuan Xiaolong, Wang Yi
机构信息
Laboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of Forestry and The Key Laboratory of Rare and Endangered Forest Plants of State Forestry Administration, Kunming, Yunnan, People's Republic of China.
出版信息
Mitochondrial DNA B Resour. 2020 Feb 3;5(1):1038-1039. doi: 10.1080/23802359.2020.1721354.
The first complete chloroplast genome (cpDNA) sequence of was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,100 bp in length, contains a large single-copy region (LSC) of 88,162 bp and a small single-copy region (SSC) of 18,786 bp, which were separated by a pair of inverted repeats (IR) regions of 26,576 bp. The genome contains 132 genes, including 87 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. Further phylogenomic analysis showed that closed to and in tribe of the Magnoliaceae family.
在本研究中，通过Illumina HiSeq双端测序数据确定了首个完整的叶绿体基因组（cpDNA）序列。该cpDNA长度为160,100 bp，包含一个88,162 bp的大单拷贝区域（LSC）和一个18,786 bp的小单拷贝区域（SSC），它们被一对26,576 bp的反向重复（IR）区域隔开。该基因组包含132个基因，包括87个蛋白质编码基因、8个核糖体RNA基因和37个转移RNA基因。进一步的系统发育基因组分析表明，其在木兰科的 族中与 和 关系密切。
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