……的完整叶绿体基因组序列
The complete chloroplast genome sequence of .
作者信息
Yuan Xiaolong, Wang Yi
机构信息
Laboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of Forestry, Kunming, People's Republic of China.
出版信息
Mitochondrial DNA B Resour. 2019 Nov 12;4(2):3943-3944. doi: 10.1080/23802359.2019.1688108.
The first complete chloroplast genome (cpDNA) sequence of was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,236 bp in length, contains a large single-copy region (LSC) of 87,484 bp and a small single-copy region (SSC) of 18,670 bp, which were separated by a pair of inverted repeats (IR) regions of 27,040 bp. The genome contains 130 genes, including 85 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 37.6%, and the corresponding values of the LSC, SSC, and IR regions are 35.6%, 31.8%, and 42.8%, respectively. Further phylogenomic analysis showed that and clustered in a clade in family Meliaceae.
本研究通过Illumina HiSeq双端测序数据确定了首个完整的叶绿体基因组（cpDNA）序列。该cpDNA长度为160,236 bp，包含一个87,484 bp的大单拷贝区域（LSC）和一个18,670 bp的小单拷贝区域（SSC），它们被一对27,040 bp的反向重复（IR）区域隔开。该基因组包含130个基因，包括85个蛋白质编码基因、8个核糖体RNA基因和37个转运RNA基因。全基因组的总体GC含量为37.6%，LSC、SSC和IR区域的相应值分别为35.6%、31.8%和42.8%。进一步的系统发育基因组分析表明，[物种名称]和[物种名称]在楝科的一个分支中聚类。
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