中国一种濒危物种的完整叶绿体基因组序列。
The complete chloroplast genome sequence of : an endangered species in China.
作者信息
Zhang Jinfeng, Li Yunqing, Yuan Xiaolong, Wang Yi
机构信息
Laboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of Forestry, Kunming, People's Republic of China.
出版信息
Mitochondrial DNA B Resour. 2019 Nov 12;4(2):3948-3949. doi: 10.1080/23802359.2019.1688110.
is an endangered plant species occurring in Yunnan province of China. The first complete chloroplast genome (cpDNA) sequence of was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 163,743 bp in length, contains a large single-copy region (LSC) of 91,075 bp and a small single-copy region (SSC) of 18,668 bp, which were separated by a pair of inverted repeats (IR) regions of 27,000 bp. The genome contains 128 genes, including 83 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 35.7%, and the corresponding values of the LSC, SSC, and IR regions are 33.0%, 29.6%, and 42.3%, respectively. Further phylogenomic analysis showed that clustered in a unique clade in family .
是一种中国云南省的濒危植物物种。本研究通过Illumina HiSeq双端测序数据确定了其首个完整叶绿体基因组（cpDNA）序列。该cpDNA长度为163,743 bp，包含一个91,075 bp的大单拷贝区域（LSC）和一个18,668 bp的小单拷贝区域（SSC），它们被一对27,000 bp的反向重复（IR）区域隔开。该基因组包含128个基因，包括83个蛋白质编码基因、8个核糖体RNA基因和37个转移RNA基因。全基因组的总体GC含量为35.7%，LSC、SSC和IR区域的相应值分别为33.0%、29.6%和42.3%。进一步的系统基因组分析表明，在科中聚在一个独特的分支中。
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