威奇托品种的完整叶绿体基因组序列及其系统发育分析。
The complete chloroplast genome sequence of cv. wichita and its phylogenetic analysis.
作者信息
Feng Gang, Mo Zheng-Hai, Peng Fang-Ren
机构信息
Co-Innovation Center for the Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China.
Institute of Botany, Chinese Academy of Sciences, Nanjing, Jiangsu Province, China.
出版信息
Mitochondrial DNA B Resour. 2020 Jun 1;5(3):2235-2236. doi: 10.1080/23802359.2020.1768925. eCollection 2020.
is an important nut tree with high economic and ecological values. Here, we presented the complete chloroplast (cp) genome sequence of cv. wichita. The whole cp genome is 160,532 bp in length, displaying a typical quadripartite structure with a large single-copy (LSC) of 897,99 bp, a small single-copy (SSC) region of 18,751 bp, and a pair of inverted repeats (IRs) of 25,991 bp. A total of 128 genes were predicted to contain in the whole cp genome, including 83 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The GC contents of the cp genome is 36.19%. Phylogenomic analysis suggested as a sister species of , , and .
是一种具有很高经济和生态价值的重要坚果类树木。在此，我们展示了cv. wichita的完整叶绿体（cp）基因组序列。整个cp基因组长度为160,532 bp，呈现出典型的四分体结构，其中大单拷贝（LSC）为89,799 bp，小单拷贝（SSC）区域为18,751 bp，一对反向重复序列（IRs）为25,991 bp。整个cp基因组共预测包含128个基因，其中包括83个蛋白质编码基因、37个tRNA基因和8个rRNA基因。cp基因组的GC含量为36.19%。系统发育基因组分析表明， 是 、 和 的姐妹物种。
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