• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

一种濒危兰花的完整叶绿体基因组

The complete chloroplast genome of an endangered orchid .

作者信息

Ge Li-Ping, Tang Lu, Li Lu, Luo Yan

机构信息

College of Forestry, Shanxi Agricultural University, Jinzhong, China.

Gardening and Horticulture Department, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, China.

出版信息

Mitochondrial DNA B Resour. 2020 Oct 21;5(3):3612-3613. doi: 10.1080/23802359.2020.1830727.

DOI:10.1080/23802359.2020.1830727
PMID:33367030
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7594755/
Abstract

(H. G. Reichenbach) Pfitzer is an endangered and threatened orchid species in China. The genetic and molecular data of this orchid species is deficient. With the aim to identify appropriate chloroplast markers for the use in a conservation biology study, the complete chloroplast genome of was reported. We found that the chloroplast genome of is 157,292 bp in length, containing a large single-copy region of 87,252 bp, a small single-copy region of 1828 bp, and a pair of inverted repeats of 34,106 bp. Genome annotation predicted 105 unique genes, including 71 protein-coding genes, 30 tRNAs, and four rRNAs. Fourteen genes contained one intron and two genes (P and 3) had two introns. The GC content of the was 35.8%. Phylogenetic analysis indicated was closely related to .

摘要

(H.G.赖兴巴赫)独花兰是中国一种濒危且受威胁的兰花物种。该兰花物种的遗传和分子数据匮乏。为了鉴定适用于保护生物学研究的叶绿体标记,报道了独花兰的完整叶绿体基因组。我们发现独花兰的叶绿体基因组长度为157,292 bp,包含一个87,252 bp的大单拷贝区域、一个1828 bp的小单拷贝区域以及一对34,106 bp的反向重复序列。基因组注释预测有105个独特基因,包括71个蛋白质编码基因、30个tRNA和4个rRNA。14个基因含有一个内含子,两个基因(P和3)有两个内含子。独花兰的GC含量为35.8%。系统发育分析表明独花兰与[具体物种]关系密切。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28a9/7594755/0b3d3ee4f5ee/TMDN_A_1830727_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28a9/7594755/0b3d3ee4f5ee/TMDN_A_1830727_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28a9/7594755/0b3d3ee4f5ee/TMDN_A_1830727_F0001_B.jpg

相似文献

1
The complete chloroplast genome of an endangered orchid .一种濒危兰花的完整叶绿体基因组
Mitochondrial DNA B Resour. 2020 Oct 21;5(3):3612-3613. doi: 10.1080/23802359.2020.1830727.
2
The complete chloroplast genome sequence of (Orchidaceae).(兰科)的完整叶绿体基因组序列。
Mitochondrial DNA B Resour. 2019 Nov 8;4(2):3910-3911. doi: 10.1080/23802359.2019.1688106.
3
The complete chloroplast genome sequences of an endangered orchid species (Orchidaceae).一种濒危兰花物种(兰科)的完整叶绿体基因组序列
Mitochondrial DNA B Resour. 2021 Jul 28;6(9):2521-2522. doi: 10.1080/23802359.2021.1959437. eCollection 2021.
4
The plastome of (Orchidaceae): an endangered species endemic to Hainan province, China.中国海南省特有的濒危物种(兰科)的质体基因组。
Mitochondrial DNA B Resour. 2021 Mar 26;6(3):1253-1255. doi: 10.1080/23802359.2021.1904801.
5
The complete chloroplast genome sequences of a highly Endangered orchid species (Orchidaceae).一种极度濒危兰花物种(兰科)的完整叶绿体基因组序列
Mitochondrial DNA B Resour. 2019 Sep 5;4(2):2928-2929. doi: 10.1080/23802359.2019.1660269.
6
Characterization of the complete chloroplast genome of , an Endangered orchid in China.中国一种濒危兰花——[兰花名称未给出]的叶绿体全基因组特征分析 。
Mitochondrial DNA B Resour. 2019 Dec 12;5(1):115-116. doi: 10.1080/23802359.2019.1698330.
7
Characterization of the complete chloroplast genome of orchid family species .兰科植物叶绿体全基因组的特征分析
Mitochondrial DNA B Resour. 2022 Jul 18;7(7):1310-1312. doi: 10.1080/23802359.2022.2096417. eCollection 2022.
8
The complete chloroplast genome sequence of (Orchidaceae).(兰科)的完整叶绿体基因组序列。
Mitochondrial DNA B Resour. 2022 Jun 24;7(6):1174-1176. doi: 10.1080/23802359.2022.2088310. eCollection 2022.
9
The complete chloroplast genome sequences of an endangered orchid species (Orchidaceae).一种濒危兰花物种(兰科)的完整叶绿体基因组序列
Mitochondrial DNA B Resour. 2022 Nov 15;7(11):1989-1991. doi: 10.1080/23802359.2022.2144514. eCollection 2022.
10
Complete chloroplast genome of (Orchidaceae).(兰科)的完整叶绿体基因组。
Mitochondrial DNA B Resour. 2020 Oct 7;5(3):3500-3501. doi: 10.1080/23802359.2020.1827069.

引用本文的文献

1
In-depth analysis of genomes and functional genomics of orchid using cutting-edge high-throughput sequencing.利用前沿的高通量测序技术对兰花基因组和功能基因组进行深入分析。
Front Plant Sci. 2022 Sep 23;13:1018029. doi: 10.3389/fpls.2022.1018029. eCollection 2022.

本文引用的文献

1
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era.IQ-TREE 2:基因组时代系统发育推断的新模型和有效方法。
Mol Biol Evol. 2020 May 1;37(5):1530-1534. doi: 10.1093/molbev/msaa015.
2
GeSeq - versatile and accurate annotation of organelle genomes.GeSeq - 细胞器基因组的多功能和准确注释。
Nucleic Acids Res. 2017 Jul 3;45(W1):W6-W11. doi: 10.1093/nar/gkx391.
3
tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes.tRNAscan-SE在线工具:整合搜索与上下文以分析转运RNA基因
Nucleic Acids Res. 2016 Jul 8;44(W1):W54-7. doi: 10.1093/nar/gkw413. Epub 2016 May 12.
4
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.MAFFT 多序列比对软件版本 7:性能和易用性的改进。
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.
5
Mauve: multiple alignment of conserved genomic sequence with rearrangements.Mauve:带重排的保守基因组序列多重比对。
Genome Res. 2004 Jul;14(7):1394-403. doi: 10.1101/gr.2289704.