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一种高山大黄的完整叶绿体基因组序列

Complete chloroplast genome sequence of an alpine rhubarb .

作者信息

Liu Mingyu, Xu Renping

机构信息

College of Basic Education, National University of Defense Technology, Changsha, China.

State Key Laboratory of Grassland Agro-Ecosystem, Institute of Innovation Ecology, Lanzhou University, Lanzhou, China.

出版信息

Mitochondrial DNA B Resour. 2020 Nov 3;5(3):3681-3682. doi: 10.1080/23802359.2020.1832930.

DOI:10.1080/23802359.2020.1832930
PMID:33367058
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7646595/
Abstract

Samuelsson (Polygonaceae) is an endangered alpine rhubarb in the Qinghai-Tibet Plateau. In this study we report the complete chloroplast genome sequence (plastome) of . The assembled plastome is 162,291 bp in length with 31,741 bp inverted repeat (IR) regions and 128 annotated genes, including 34 tRNA genes, 8 rRNA genes, and 86 protein-coding genes. Phylogenetic analyses based on the full plastome sequences suggest the close relationship of with and . The plastome reported here is highly useful for designing plastome SSR markers to conduct a further conservation genetic study of this endangered rhubarb.

摘要

大黄属(蓼科)是青藏高原一种濒危的高山大黄。在本研究中,我们报道了[物种名称]的完整叶绿体基因组序列(质体基因组)。组装后的质体基因组长度为162,291 bp,有31,741 bp的反向重复(IR)区域和128个注释基因,包括34个tRNA基因、8个rRNA基因和86个蛋白质编码基因。基于全质体基因组序列的系统发育分析表明[物种名称]与[其他物种名称1]和[其他物种名称2]关系密切。这里报道的质体基因组对于设计质体基因组微卫星标记以对这种濒危大黄进行进一步的保护遗传学研究非常有用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e32e/7646595/f2840a775c10/TMDN_A_1832930_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e32e/7646595/f2840a775c10/TMDN_A_1832930_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e32e/7646595/f2840a775c10/TMDN_A_1832930_F0001_B.jpg

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本文引用的文献

1
Plastome and phylogenetic relationship of the woody buckwheat in the Qinghai-Tibet Plateau.青藏高原木本荞麦的质体基因组与系统发育关系
Plant Divers. 2020 Oct 24;43(3):198-205. doi: 10.1016/j.pld.2020.10.001. eCollection 2021 Jun.
2
The complete chloroplast genome sequence of , an endangered Chinese medicinal plant ().一种濒危中国药用植物()的完整叶绿体基因组序列
Mitochondrial DNA B Resour. 2019 Nov 13;4(2):4055-4056. doi: 10.1080/23802359.2019.1688722.
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UFBoot2: Improving the Ultrafast Bootstrap Approximation.UFBoot2:改进超快bootstrap 逼近算法。
Mol Biol Evol. 2018 Feb 1;35(2):518-522. doi: 10.1093/molbev/msx281.
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Nucleic Acids Res. 2017 Feb 28;45(4):e18. doi: 10.1093/nar/gkw955.
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Appl Plant Sci. 2015 Aug 10;3(8). doi: 10.3732/apps.1500026. eCollection 2015 Aug.
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The complete chloroplast genome sequence of the medicinal plant Rheum palmatum L. (Polygonaceae).药用植物掌叶大黄(蓼科)的叶绿体全基因组序列
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Rapid radiation of Rheum (Polygonaceae) and parallel evolution of morphological traits.大黄属(蓼科)的快速辐射和形态特征的平行进化。
Mol Phylogenet Evol. 2012 Apr;63(1):150-8. doi: 10.1016/j.ympev.2012.01.002. Epub 2012 Jan 12.