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一种濒危中国药用植物()的完整叶绿体基因组序列

The complete chloroplast genome sequence of , an endangered Chinese medicinal plant ().

作者信息

Huo Xiaowei, Wei Hao, Gao Jing, Yan Yonggang, Zhang Gang, Liu Mengmeng

机构信息

Key Laboratory of Pharmaceutical Quality Control of Hebei Province, College of Pharmaceutical Science, Hebei University, Baoding, PR China.

College of Pharmacy and Shaanxi Qinling Application Development and Engineering Center of Chinese Herbal Medicine, Shaanxi University of Chinese Medicine, Xi'an, PR China.

出版信息

Mitochondrial DNA B Resour. 2019 Nov 13;4(2):4055-4056. doi: 10.1080/23802359.2019.1688722.

DOI:10.1080/23802359.2019.1688722
PMID:33366315
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7707752/
Abstract

is a valuable medicinal plant endemic to the Qinghai-Tibetan Plateau. It has been listed classified under the IUCN Red List categories of Vulnerable due to the low reproductive rate and heavy exploitation. In this study, the complete chloroplast (cp) genome of has been assembled using data from the whole-genome Illumina sequencing. The cp genome is 161,515 bp in size and contains two inverted repeat regions of 30,823 bp each, which is separated by a large single-copy region of 86,675 bp and a small single-copy region of 13,194 bp. The cp genome contains 87 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis revealed that the cp genome of was closely related to that of the .

摘要

是青藏高原特有的一种珍贵药用植物。由于繁殖率低和过度开发,它已被列入世界自然保护联盟红色名录中的易危类别。在本研究中,利用全基因组Illumina测序数据组装了该植物的完整叶绿体(cp)基因组。该cp基因组大小为161,515 bp,包含两个各为30,823 bp的反向重复区域,由一个86,675 bp的大单拷贝区域和一个13,194 bp的小单拷贝区域隔开。该cp基因组包含87个蛋白质编码基因、37个tRNA基因和8个rRNA基因。系统发育分析表明,该植物的cp基因组与的cp基因组密切相关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7b5e/7707752/a478bdad573b/TMDN_A_1688722_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7b5e/7707752/a478bdad573b/TMDN_A_1688722_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7b5e/7707752/a478bdad573b/TMDN_A_1688722_F0001_B.jpg

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本文引用的文献

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Mol Biol Evol. 2018 Jun 1;35(6):1547-1549. doi: 10.1093/molbev/msy096.
2
Genetic diversity and population structure of Rheum tanguticum (Dahuang) in China.中国大黄属植物唐古特大黄的遗传多样性和种群结构。
Chin Med. 2014 Nov 3;9(1):26. doi: 10.1186/1749-8546-9-26. eCollection 2014.
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Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach.
直接从基因组下一代测序读段重建线粒体基因组——一种诱饵和迭代映射方法。
Nucleic Acids Res. 2013 Jul;41(13):e129. doi: 10.1093/nar/gkt371. Epub 2013 May 9.
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OrganellarGenomeDRAW--a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets.细胞器基因组绘图软件--一套用于生成质体和线粒体基因组物理图谱以及可视化表达数据集的工具。
Nucleic Acids Res. 2013 Jul;41(Web Server issue):W575-81. doi: 10.1093/nar/gkt289. Epub 2013 Apr 22.