Department of Bioengineering, University of Washington, Seattle, WA, 98195-5013, USA.
School of Biosciences, University of Kent, Canterbury, United Kingdom.
Arch Biochem Biophys. 2021 Mar 15;699:108733. doi: 10.1016/j.abb.2020.108733. Epub 2020 Dec 31.
Muscle myosins are molecular motors that hydrolyze ATP and generate force through coordinated interactions with actin filaments, known as cross-bridge cycling. During the cross-bridge cycle, functional sites in myosin 'sense' changes in interactions with actin filaments and the nucleotide binding region, resulting in allosteric transmission of information throughout the structure. We investigated whether the dynamics of the post-powerstroke state of the cross-bridge cycle are modulated in a nucleotide-dependent fashion. We compared molecular dynamics simulations of the myosin II motor domain (M) from Dictyostelium discoideum in the presence of ADP (M.ADP) versus 2'-deoxy-ADP bound myosin (M.dADP). We found that dADP was more flexible than ADP and the two nucleotides interacted with myosin in different ways. Replacement of ADP with dADP in the post-powerstroke state also altered the conformation of the actin binding region in myosin heads. Our results provide atomic level insights into allosteric communication networks in myosin that provide insight into the nucleotide-dependent dynamics of the cross-bridge cycle.
肌球蛋白是一种分子马达,通过与肌动蛋白丝的协调相互作用(称为横桥循环)来水解 ATP 并产生力。在横桥循环中,肌球蛋白上的功能位点“感知”与肌动蛋白丝和核苷酸结合区相互作用的变化,从而在整个结构中传递信息的变构传递。我们研究了横桥循环的后动力冲程状态的动力学是否以核苷酸依赖的方式进行调节。我们比较了存在 ADP(M.ADP)与 2'-脱氧-ADP 结合肌球蛋白(M.dADP)时来自盘基网柄菌的肌球蛋白 II 马达结构域(M)的分子动力学模拟。我们发现 dADP 比 ADP 更具柔性,并且这两种核苷酸以不同的方式与肌球蛋白相互作用。在动力冲程后状态下用 dADP 取代 ADP 也改变了肌球蛋白头部中肌动蛋白结合区的构象。我们的结果提供了肌球蛋白中变构通讯网络的原子水平见解,为横桥循环的核苷酸依赖性动力学提供了深入了解。