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2021 年核酸研究数据库问题及在线分子生物学数据库资源收藏。

The 2021 Nucleic Acids Research database issue and the online molecular biology database collection.

机构信息

Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, UK.

Institut Curie, 25 rue d'Ulm, 75005 Paris, France.

出版信息

Nucleic Acids Res. 2021 Jan 8;49(D1):D1-D9. doi: 10.1093/nar/gkaa1216.

Abstract

The 2021 Nucleic Acids Research database Issue contains 189 papers spanning a wide range of biological fields and investigation. It includes 89 papers reporting on new databases and 90 covering recent changes to resources previously published in the Issue. A further ten are updates on databases most recently published elsewhere. Seven new databases focus on COVID-19 and SARS-CoV-2 and many others offer resources for studying the virus. Major returning nucleic acid databases include NONCODE, Rfam and RNAcentral. Protein family and domain databases include COG, Pfam, SMART and Panther. Protein structures are covered by RCSB PDB and dispersed proteins by PED and MobiDB. In metabolism and signalling, STRING, KEGG and WikiPathways are featured, along with returning KLIFS and new DKK and KinaseMD, all focused on kinases. IMG/M and IMG/VR update in the microbial and viral genome resources section, while human and model organism genomics resources include Flybase, Ensembl and UCSC Genome Browser. Cancer studies are covered by updates from canSAR and PINA, as well as newcomers CNCdatabase and Oncovar for cancer drivers. Plant comparative genomics is catered for by updates from Gramene and GreenPhylDB. The entire Database Issue is freely available online on the Nucleic Acids Research website (https://academic.oup.com/nar). The NAR online Molecular Biology Database Collection has been substantially updated, revisiting nearly 1000 entries, adding 90 new resources and eliminating 86 obsolete databases, bringing the current total to 1641 databases. It is available at https://www.oxfordjournals.org/nar/database/c/.

摘要

2021 年核酸研究数据库专刊包含 189 篇论文,涵盖了广泛的生物领域和研究。其中 89 篇论文报告了新数据库,90 篇论文涵盖了之前在该专刊上发表的资源的最新变化。另外 10 篇是最近在其他地方发表的数据库的更新。7 个新数据库专注于 COVID-19 和 SARS-CoV-2,还有许多其他数据库提供了研究该病毒的资源。主要回归的核酸数据库包括 NONCODE、Rfam 和 RNAcentral。蛋白质家族和结构域数据库包括 COG、Pfam、SMART 和 Panther。蛋白质结构由 RCSB PDB 覆盖,分散的蛋白质由 PED 和 MobiDB 覆盖。在代谢和信号转导方面,STRING、KEGG 和 WikiPathways 是特色,同时还有回归的 KLIFS 和新的 DKK 和 KinaseMD,它们都专注于激酶。IMG/M 和 IMG/VR 在微生物和病毒基因组资源部分进行了更新,而人类和模式生物基因组资源包括 Flybase、Ensembl 和 UCSC Genome Browser。canSAR 和 PINA 的更新涵盖了癌症研究,以及新的 CNCdatabase 和癌症驱动基因的 Oncovar。植物比较基因组学由 Gramene 和 GreenPhylDB 的更新提供。整个数据库专刊可在核酸研究网站(https://academic.oup.com/nar)上免费在线获取。NAR 在线分子生物学数据库集合进行了大量更新,重新访问了近 1000 个条目,增加了 90 个新资源,并删除了 86 个过时的数据库,目前总数达到 1641 个数据库。它可在 https://www.oxfordjournals.org/nar/database/c/ 获得。

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