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利用分子对接和模拟分析将已知药物用于治疗新冠肺炎

Repurposing of known drugs for COVID-19 using molecular docking and simulation analysis.

作者信息

Bhanu Piyush, Setlur Anagha S, K Chandrashekar, Niranjan Vidya, Hemandhar Kumar Nisha, Buchke Sakshi, Kumar Jitendra, Rani Anita, Tiwari Sushil M, Mishra Vachaspati

机构信息

Xome Life Sciences, Bangalore Bio Innovation Centre (BBC), Helix Biotech Park, Bengaluru, Karnataka- 560100, India.

Department of Biotechnology, RV College of Engineering, RV Vidyanikethan Post, Mysuru Road, Bengaluru 560059, India.

出版信息

Bioinformation. 2023 Feb 28;19(2):149-159. doi: 10.6026/97320630019149. eCollection 2023.

Abstract

We selected fifty one drugs already known for their potential disease treatment roles in various studies and subjected to docking and molecular docking simulation (MDS) analyses. Five of them showed promising features that are discussed and suggested as potential candidates for repurposing for COVID-19. These top five compounds were boswellic acid, pimecrolimus, GYY-4137, BMS-345541 and triamcinolone hexacetonide that interacted with the chosen receptors 1R42, 4G3D, 6VW1, 6VXX and 7MEQ, respectively with binding energies of -9.2 kcal/mol, -9.1 kcal/mol, -10.3 kcal/mol, -10.1 kcal/mol and -8.7 kcal/mol, respectively. The MDS studies for the top 5 best complexes revealed binding features for the chosen receptor, human NF-kappa B transcription factor as an important drug target in COVID-19-based drug development strategies.

摘要

我们挑选了51种在各种研究中已因其潜在疾病治疗作用而闻名的药物,并对其进行对接和分子对接模拟(MDS)分析。其中五种显示出有前景的特征,这些特征将被讨论,并被建议作为COVID-19药物重新利用的潜在候选药物。这五种顶级化合物分别是乳香酸、吡美莫司、GYY-4137、BMS-345541和曲安奈德己酸酯,它们分别与选定的受体1R42、4G3D、6VW1、6VXX和7MEQ相互作用,结合能分别为-9.2千卡/摩尔、-9.1千卡/摩尔、-10.3千卡/摩尔、-10.1千卡/摩尔和-8.7千卡/摩尔。对排名前5的最佳复合物的MDS研究揭示了选定受体人核因子κB转录因子的结合特征,该转录因子是基于COVID-19的药物开发策略中的一个重要药物靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/496f/10560309/a233211fa01c/97320630019149F1.jpg

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