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2018 年核酸研究数据库问题及在线分子生物学数据库合集。

The 2018 Nucleic Acids Research database issue and the online molecular biology database collection.

机构信息

Institute of Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, UK.

Institut Curie, 25 rue d'Ulm, 75005 Paris, France.

出版信息

Nucleic Acids Res. 2018 Jan 4;46(D1):D1-D7. doi: 10.1093/nar/gkx1235.

Abstract

The 2018 Nucleic Acids Research Database Issue contains 181 papers spanning molecular biology. Among them, 82 are new and 84 are updates describing resources that appeared in the Issue previously. The remaining 15 cover databases most recently published elsewhere. Databases in the area of nucleic acids include 3DIV for visualisation of data on genome 3D structure and RNArchitecture, a hierarchical classification of RNA families. Protein databases include the established SMART, ELM and MEROPS while GPCRdb and the newcomer STCRDab cover families of biomedical interest. In the area of metabolism, HMDB and Reactome both report new features while PULDB appears in NAR for the first time. This issue also contains reports on genomics resources including Ensembl, the UCSC Genome Browser and ENCODE. Update papers from the IUPHAR/BPS Guide to Pharmacology and DrugBank are highlights of the drug and drug target section while a number of proteomics databases including proteomicsDB are also covered. The entire Database Issue is freely available online on the Nucleic Acids Research website (https://academic.oup.com/nar). The NAR online Molecular Biology Database Collection has been updated, reviewing 138 entries, adding 88 new resources and eliminating 47 discontinued URLs, bringing the current total to 1737 databases. It is available at http://www.oxfordjournals.org/nar/database/c/.

摘要

2018 年核酸研究数据库专刊包含 181 篇涵盖分子生物学的论文。其中,82 篇为新论文,84 篇为之前在专刊中出现过的资源更新描述。其余 15 篇涵盖了最近在其他地方出版的数据库。核酸领域的数据库包括 3DIV,用于可视化基因组 3D 结构数据,以及 RNArchitecture,这是 RNA 家族的层次分类。蛋白质数据库包括成熟的 SMART、ELM 和 MEROPS,而 GPCRdb 和新成员 STCRDab 则涵盖了具有生物医学意义的家族。在代谢领域,HMDB 和 Reactome 都报告了新功能,而 PULDB 则首次出现在 NAR 中。本期专刊还包含了基因组学资源的报告,包括 Ensembl、UCSC 基因组浏览器和 ENCODE。IUPHAR/BPS 药理学指南和 DrugBank 的更新论文是药物和药物靶点部分的重点,同时还涵盖了许多蛋白质组学数据库,包括 proteomicsDB。整个数据库专刊可在核酸研究网站(https://academic.oup.com/nar)上免费在线获取。NAR 在线分子生物学数据库收藏已更新,共审查了 138 项条目,增加了 88 个新资源,删除了 47 个已停用的 URL,目前总数达到 1737 个数据库。它可在 http://www.oxfordjournals.org/nar/database/c/ 获得。

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