Wang Mengru, Xi Wei, Li Zhengjun
College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, China.
Sheng Wu Gong Cheng Xue Bao. 2020 Dec 25;36(12):2695-2706. doi: 10.13345/j.cjb.200366.
The marine genus Marinobacterium was first identified in 1997, and a total of 18 species have been characterized so far, 10 of which have published whole-genome sequencing data. This article summarizes the characteristics of Marinobacterium genus and analyzes the genome sequencing data related to the carbon source utilization, polyhydroxyalkanoate metabolism, and aromatic compounds degradation. The Marinobacterium species possess the complete glycolysis pathway and tricarboxylic acid cycle, yet lack genes involved in xylose utilization. All strains of the Marinobacterium genus contain the genes encoding for the typeⅠand type Ⅲ polyhydroxyalkanoate synthases, suggesting that the genus may have ability of polyhydroxyalkanoate accumulation. The Marinobacterium species contain the degradation pathways of aromatic compounds. Benzene, phenol and benzoic acid can be degraded into catechol via different enzymes, subsequently catechol is converted to 3-ketoadipate through the ortho-cleavage pathway. Alternatively, catechol can be degraded into pyruvate and acetyl-CoA. The analysis of genome sequencing data of the Marinobacterium genus provides in-depth understanding of the metabolic characteristics, indicating that the genus may have certain applications in the synthesis of polyhydroxyalkanoate and the removal of marine aromatic compounds.
海洋杆菌属(Marinobacterium)于1997年首次被鉴定出来,迄今为止共鉴定出18个物种,其中10个已发表了全基因组测序数据。本文总结了海洋杆菌属的特征,并分析了与碳源利用、聚羟基脂肪酸酯代谢及芳香化合物降解相关的基因组测序数据。海洋杆菌属物种拥有完整的糖酵解途径和三羧酸循环,但缺乏参与木糖利用的基因。海洋杆菌属的所有菌株都含有编码Ⅰ型和Ⅲ型聚羟基脂肪酸酯合酶的基因,这表明该属可能具有聚羟基脂肪酸酯积累能力。海洋杆菌属物种含有芳香化合物降解途径。苯、苯酚和苯甲酸可通过不同的酶降解为邻苯二酚,随后邻苯二酚通过邻位裂解途径转化为3-酮己二酸。或者,邻苯二酚可降解为丙酮酸和乙酰辅酶A。对海洋杆菌属基因组测序数据的分析为其代谢特征提供了深入了解,表明该属在聚羟基脂肪酸酯合成及海洋芳香化合物去除方面可能具有一定应用价值。