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深度学习和计算机视觉将改变昆虫学。

Deep learning and computer vision will transform entomology.

机构信息

Department of Bioscience, Aarhus University, DK-8410 Rønde, Denmark;

Arctic Research Centre, Aarhus University, DK-8410 Rønde, Denmark.

出版信息

Proc Natl Acad Sci U S A. 2021 Jan 12;118(2). doi: 10.1073/pnas.2002545117.

Abstract

Most animal species on Earth are insects, and recent reports suggest that their abundance is in drastic decline. Although these reports come from a wide range of insect taxa and regions, the evidence to assess the extent of the phenomenon is sparse. Insect populations are challenging to study, and most monitoring methods are labor intensive and inefficient. Advances in computer vision and deep learning provide potential new solutions to this global challenge. Cameras and other sensors can effectively, continuously, and noninvasively perform entomological observations throughout diurnal and seasonal cycles. The physical appearance of specimens can also be captured by automated imaging in the laboratory. When trained on these data, deep learning models can provide estimates of insect abundance, biomass, and diversity. Further, deep learning models can quantify variation in phenotypic traits, behavior, and interactions. Here, we connect recent developments in deep learning and computer vision to the urgent demand for more cost-efficient monitoring of insects and other invertebrates. We present examples of sensor-based monitoring of insects. We show how deep learning tools can be applied to exceptionally large datasets to derive ecological information and discuss the challenges that lie ahead for the implementation of such solutions in entomology. We identify four focal areas, which will facilitate this transformation: 1) validation of image-based taxonomic identification; 2) generation of sufficient training data; 3) development of public, curated reference databases; and 4) solutions to integrate deep learning and molecular tools.

摘要

地球上大多数动物物种都是昆虫,最近的报告表明,它们的数量正在急剧下降。尽管这些报告来自广泛的昆虫分类群和地区,但评估这一现象程度的证据还很稀少。昆虫种群难以研究,大多数监测方法既费力又低效。计算机视觉和深度学习的进步为这一全球性挑战提供了潜在的新解决方案。摄像机和其他传感器可以有效地、连续地、非侵入性地在昼夜和季节性周期内进行昆虫学观察。标本的物理外观也可以通过实验室中的自动化成像来捕获。当对这些数据进行训练时,深度学习模型可以提供昆虫数量、生物量和多样性的估计。此外,深度学习模型可以量化表型特征、行为和相互作用的变化。在这里,我们将深度学习和计算机视觉的最新发展与更具成本效益的昆虫和其他无脊椎动物监测的迫切需求联系起来。我们展示了基于传感器的昆虫监测的例子。我们展示了如何将深度学习工具应用于异常大的数据集,以得出生态信息,并讨论了在昆虫学中实施这些解决方案所面临的挑战。我们确定了四个重点领域,这将促进这一转变:1)基于图像的分类识别验证;2)生成足够的训练数据;3)开发公共、策划参考数据库;以及 4)整合深度学习和分子工具的解决方案。

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