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下一代昆虫分类学通过比较不同的深度学习算法。

Next generation insect taxonomic classification by comparing different deep learning algorithms.

机构信息

Institute for Tropical Biology and Conservation, Universiti Malaysia Sabah, Kota Kinabalu, Sabah, Malaysia.

School of Biological Sciences, Universiti Sains Malaysia, Gelugor, Pulau Pinang, Malaysia.

出版信息

PLoS One. 2022 Dec 30;17(12):e0279094. doi: 10.1371/journal.pone.0279094. eCollection 2022.

Abstract

Insect taxonomy lies at the heart of many aspects of ecology, and identification tasks are challenging due to the enormous inter- and intraspecies variation of insects. Conventional methods used to study insect taxonomy are often tedious, time-consuming, labor intensive, and expensive, and recently, computer vision with deep learning algorithms has offered an alternative way to identify and classify insect images into their taxonomic levels. We designed the classification task according to the taxonomic ranks of insects-order, family, and genus-and compared the generalization of four state-of-the-art deep convolutional neural network (DCNN) architectures. The results show that different taxonomic ranks require different deep learning (DL) algorithms to generate high-performance models, which indicates that the design of an automated systematic classification pipeline requires the integration of different algorithms. The InceptionV3 model has advantages over other models due to its high performance in distinguishing insect order and family, which is having F1-score of 0.75 and 0.79, respectively. Referring to the performance per class, Hemiptera (order), Rhiniidae (family), and Lucilia (genus) had the lowest performance, and we discuss the possible rationale and suggest future works to improve the generalization of a DL model for taxonomic rank classification.

摘要

昆虫分类学是生态学的许多方面的核心,由于昆虫的种间和种内变异巨大,因此鉴定任务具有挑战性。传统的昆虫分类学研究方法通常繁琐、耗时、劳动密集且昂贵,最近,基于深度学习算法的计算机视觉提供了一种替代方法,可以将昆虫图像识别和分类到其分类级别。我们根据昆虫的分类阶元(目、科和属)设计了分类任务,并比较了四种最先进的深度卷积神经网络(DCNN)架构的泛化能力。结果表明,不同的分类阶元需要不同的深度学习(DL)算法来生成高性能模型,这表明自动化系统分类管道的设计需要集成不同的算法。InceptionV3 模型在区分昆虫目和科方面具有优势,其 F1 分数分别为 0.75 和 0.79。就每个类别的性能而言,半翅目(目)、Rhiniidae(科)和 Lucilia(属)的性能最低,我们讨论了可能的原理,并提出了未来改进 DL 模型在分类阶元分类中的泛化能力的建议。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a057/9803097/757354a29bff/pone.0279094.g001.jpg

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