Department of Biochemistry and Clinical Chemistry, Faculty of Medicine, University of Kelaniya, Ragama, Sri Lanka.
Department of Medical Microbiology, Faculty of Medicine, University of Kelaniya, Ragama, Sri Lanka.
PLoS One. 2021 Jan 12;16(1):e0245290. doi: 10.1371/journal.pone.0245290. eCollection 2021.
Rapidly progressing antibiotic resistance is a great challenge in therapy. In particular, the infections caused by carbapenem-resistant Enterobacteriaceae (CRE) are exceedingly difficult to treat. Carbapenemase production is the predominant mechanism of resistance in CRE. Early and accurate identification of carbapenemase-producing carbapenem-resistant Enterobacteriaceae (CP-CRE) is extremely important for the treatment and prevention of such infections. In the present study, four phenotypic carbapenemase detection tests were compared and an algorithm was developed for rapid and cost-effective identification of CP-CRE. A total of 117 Enterobacteriaceae (54 CP-CRE, 3 non-CP-CRE, and 60 non-CRE) isolates were tested for carbapenemase production using modified Hodge test (MHT), modified carbapenem inactivation method (mCIM), Carba NP test (CNPt), and CNPt-direct test. The overall sensitivity/specificity values were 90.7%/92.1% for MHT, 100%/100% for mCIM, 75.9%/100% for CNPt, and 83.3%/100% for CNPt-direct. OXA-48-like enzymes were detected with 93.2% sensitivity by MHT and >77.3% sensitivity by two Carba NP tests. MHT could only detect half of the NDM carbapenemase producers. CNPt-direct exhibited enhanced sensitivity compared to CNPt (100% vs 25%) for detection of NDM producers. Considering these findings we propose CNPt-direct as the first test followed by mCIM for rapid detection of CP-CRE. With this algorithm >80% of the CP-CRE could be detected within 24 hours from the time the sample is received and 100% CP-CRE could be detected in day two. In conclusion, mCIM was the most sensitive assay for the identification of CP-CRE. CNPt-direct performed better than CNPt. An algorithm consisting CNPt-direct and mCIM allows rapid and reliable detection of carbapenemase production in resource-limited settings.
快速发展的抗生素耐药性是治疗中的一大挑战。特别是由碳青霉烯类耐药肠杆菌科(CRE)引起的感染极难治疗。碳青霉烯酶的产生是 CRE 耐药的主要机制。早期和准确识别产碳青霉烯酶的碳青霉烯类耐药肠杆菌科(CP-CRE)对于此类感染的治疗和预防至关重要。在本研究中,比较了四种表型碳青霉烯酶检测试验,并制定了一种快速且具有成本效益的 CP-CRE 鉴定算法。共检测了 117 株肠杆菌科(54 株 CP-CRE、3 株非 CP-CRE 和 60 株非 CRE)对碳青霉烯酶产生的检测,采用改良 Hodge 试验(MHT)、改良碳青霉烯失活法(mCIM)、Carba NP 试验(CNPt)和 CNPt-直接试验。MHT 的总体敏感性/特异性值为 90.7%/92.1%,mCIM 为 100%/100%,CNPt 为 75.9%/100%,CNPt-直接为 83.3%/100%。MHT 检测到 93.2%的 OXA-48 样酶,两种 Carba NP 试验检测到 >77.3%的 OXA-48 样酶。MHT 只能检测到一半的 NDM 碳青霉烯酶产生菌。CNPt-直接检测 NDM 产生菌的敏感性比 CNPt 提高(100%比 25%)。考虑到这些发现,我们建议 CNPt-直接作为快速检测 CP-CRE 的第一项测试,其次是 mCIM。通过该算法,在收到样本后 24 小时内可以检测到超过 80%的 CP-CRE,在第二天可以检测到 100%的 CP-CRE。总之,mCIM 是鉴定 CP-CRE 最敏感的检测方法。CNPt-直接比 CNPt 表现更好。由 CNPt-直接和 mCIM 组成的算法允许在资源有限的环境中快速可靠地检测碳青霉烯酶的产生。