Computational Structural Biology Section, Frederick National Laboratory for Cancer Research in the Laboratory of Cancer Immunometabolism, National Cancer Institute, Frederick, MD 21702, USA; Department of Human Molecular Genetics and Biochemistry, Sackler School of Medicine, Tel Aviv University, Tel Aviv 69978, Israel.
Computational Structural Biology Section, Frederick National Laboratory for Cancer Research in the Laboratory of Cancer Immunometabolism, National Cancer Institute, Frederick, MD 21702, USA.
Cell Chem Biol. 2021 Feb 18;28(2):121-133. doi: 10.1016/j.chembiol.2020.12.012. Epub 2021 Jan 12.
Intuitively, functional states should be targeted; not nonfunctional ones. So why could drugging the inactive K-Ras4Bwork-but drugging the inactive kinase will likely not? The reason is the distinct oncogenic mechanisms. Kinase driver mutations work by stabilizing the active state and/or destabilizing the inactive state. Either way, oncogenic kinases are mostly in the active state. Ras driver mutations work by quelling its deactivation mechanisms, GTP hydrolysis, and nucleotide exchange. Covalent inhibitors that bind to the inactive GDP-bound K-Ras4B conformation can thus work. By contrast, in kinases, allosteric inhibitors work by altering the active-site conformation to favor orthosteric drugs. From the translational standpoint this distinction is vital: it expedites effective pharmaceutical development and extends the drug classification based on the mechanism of action. Collectively, here we postulate that drug action relates to blocking the mechanism of activation, not to whether the protein is in the active or inactive state.
从直观上看,应该针对的是功能状态,而不是非功能状态。那么,为什么给无功能的 K-Ras4B 下药会奏效,而给无功能的激酶下药却可能不会呢?原因在于不同的致癌机制。激酶驱动突变通过稳定活性状态和/或破坏非活性状态起作用。无论哪种方式,致癌激酶大多处于活性状态。Ras 驱动突变通过抑制其失活机制、GTP 水解和核苷酸交换起作用。因此,能够与非活性 GDP 结合的 K-Ras4B 构象结合的共价抑制剂可以发挥作用。相比之下,变构抑制剂通过改变活性部位构象来有利于正位药物,从而在激酶中起作用。从转化的角度来看,这种区别至关重要:它可以加快有效的药物开发,并根据作用机制扩展药物分类。总的来说,我们在这里假设药物作用与阻断激活机制有关,而与蛋白质处于活性或非活性状态无关。