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靶向Ras GTP酶:全面的机制与信号结构视角

Drugging Ras GTPase: a comprehensive mechanistic and signaling structural view.

作者信息

Lu Shaoyong, Jang Hyunbum, Gu Shuo, Zhang Jian, Nussinov Ruth

机构信息

Department of Pathophysiology, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Children's Medical Center, Shanghai Jiao Tong University, School of Medicine, Shanghai, 200127, China.

出版信息

Chem Soc Rev. 2016 Sep 21;45(18):4929-52. doi: 10.1039/c5cs00911a. Epub 2016 Jul 11.

Abstract

Ras proteins are small GTPases, cycling between inactive GDP-bound and active GTP-bound states. Through these switches they regulate signaling that controls cell growth and proliferation. Activating Ras mutations are associated with approximately 30% of human cancers, which are frequently resistant to standard therapies. Over the past few years, structural biology and in silico drug design, coupled with improved screening technology, led to a handful of promising inhibitors, raising the possibility of drugging Ras proteins. At the same time, the invariable emergence of drug resistance argues for the critical importance of additionally honing in on signaling pathways which are likely to be involved. Here we overview current advances in Ras structural knowledge, including the conformational dynamic of full-length Ras in solution and at the membrane, therapeutic inhibition of Ras activity by targeting its active site, allosteric sites, and Ras-effector protein-protein interfaces, Ras dimers, the K-Ras4B/calmodulin/PI3Kα trimer, and targeting Ras with siRNA. To mitigate drug resistance, we propose signaling pathways that can be co-targeted along with Ras and explain why. These include pathways leading to the expression (or activation) of YAP1 and c-Myc. We postulate that these and Ras signaling pathways, MAPK/ERK and PI3K/Akt/mTOR, act independently and in corresponding ways in cell cycle control. The structural data are instrumental in the discovery and development of Ras inhibitors for treating RAS-driven cancers. Together with the signaling blueprints through which drug resistance can evolve, this review provides a comprehensive and innovative master plan for tackling mutant Ras proteins.

摘要

Ras蛋白是小GTP酶,在无活性的GDP结合状态和活性的GTP结合状态之间循环。通过这些开关,它们调节控制细胞生长和增殖的信号传导。激活的Ras突变与大约30%的人类癌症相关,这些癌症通常对标准疗法耐药。在过去几年中,结构生物学和计算机辅助药物设计,结合改进的筛选技术,产生了一些有前景的抑制剂,增加了对Ras蛋白进行药物治疗的可能性。同时,耐药性的不断出现表明,额外关注可能涉及的信号通路至关重要。在这里,我们概述了Ras结构知识的当前进展,包括全长Ras在溶液中和膜上的构象动力学、通过靶向其活性位点、变构位点以及Ras效应器蛋白-蛋白界面来治疗性抑制Ras活性、Ras二聚体、K-Ras4B/钙调蛋白/PI3Kα三聚体,以及用小干扰RNA靶向Ras。为了减轻耐药性,我们提出了可以与Ras共同靶向的信号通路并解释了原因。这些包括导致YAP1和c-Myc表达(或激活)的通路。我们假设这些通路以及Ras信号通路MAPK/ERK和PI3K/Akt/mTOR在细胞周期控制中以独立且相应的方式起作用。结构数据有助于发现和开发用于治疗RAS驱动癌症的Ras抑制剂。连同耐药性可能产生的信号蓝图,本综述为解决突变型Ras蛋白提供了一个全面且创新的总体计划。

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